Whole genome sequencing of ASD 16 and ADT 43 to identify predominant grain size and starch associated alleles in rice.
Jayakanthan MannuAbillasha Mohan LathaShalini RajagopalHari Dharani A LalithaRaveendran MuthurajanArul LoganathanMohankumar SubbarayaluGnanam RamasamyRamalingam JegadeesanPublished in: Molecular biology reports (2022)
An "A to G" polymorphism leading to SER 74 PRO was identified at the CDS position 220 of the An-1 gene, encoding bHLH domain-containing protein that regulates awn formation and increase in grain length. The non-synonymous substitutions such as A545C variant leading PHE 182 CYS in ADP Glucose Pyrophosphorylase large subunit IV (AGPL4) and C3094G variant leading to VAL 1032 LEU in Starch synthase IIIb (OsSSIIIb) were also identified in the starch biosynthesis genes. These identified allelic variants may contribute to the crop improvement programs in rice.
Keyphrases
- copy number
- genome wide
- autism spectrum disorder
- genome wide identification
- transcription factor
- climate change
- lactic acid
- public health
- quantum dots
- blood glucose
- intellectual disability
- metabolic syndrome
- gene expression
- protein protein
- small molecule
- genome wide analysis
- anti inflammatory
- binding protein
- weight loss
- protein kinase