Application of unimodal probability distribution models for morphological phenotyping of budding yeast.
Yoshikazu OhyaFarzan GhanegolmohammadiKaori Itto-NakamaPublished in: FEMS yeast research (2024)
Morphological phenotyping of the budding yeast Saccharomyces cerevisiae has helped to greatly clarify the functions of genes and increase our understanding of cellular functional networks. It is necessary to understand cell morphology and perform quantitative morphological analysis (QMA) but assigning precise values to morphological phenotypes has been challenging. We recently developed the Unimodal Morphological Data image analysis pipeline for this purpose. All true values can be estimated theoretically by applying an appropriate probability distribution if the distribution of experimental values follows a unimodal pattern. This reliable pipeline allows several downstream analyses, including detection of subtle morphological differences, selection of mutant strains with similar morphology, clustering based on morphology, and study of morphological diversity. In addition to basic research, morphological analyses of yeast cells can also be used in applied research to monitor breeding and fermentation processes and control the fermentation activity of yeast cells.
Keyphrases
- saccharomyces cerevisiae
- induced apoptosis
- escherichia coli
- single cell
- stem cells
- high throughput
- cell cycle arrest
- cell death
- high resolution
- electronic health record
- machine learning
- oxidative stress
- rna seq
- dna methylation
- big data
- cell proliferation
- mass spectrometry
- cell wall
- pi k akt
- lactic acid
- cell therapy
- deep learning
- artificial intelligence
- sensitive detection
- wild type
- bioinformatics analysis