The trans-ancestral genomic architecture of glycemic traits.
Ji ChenCassandra N SpracklenGaelle MarenneArushi VarshneyLaura J CorbinJian'an LuanSara M WillemsYing WuXiaoshuai ZhangMomoko HorikoshiThibaud S BoutinReedik MägiJohannes WaageRuifang Li-GaoKei Hang Katie ChanJie YaoMila D AnasantiAudrey Y ChuAnnique ClaringbouldJani HeikkinenJaeyoung HongJouke-Jan HottengaShaofeng HuoMarika A KaakinenTin LouieWinfried MärzHortensia Moreno-MaciasAnne NdunguSarah C NelsonIlja M NolteKari E NorthChelsea K RaulersonDebashree RayRebecca RohdeDenis RybinClaudia SchurmannXueling SimLorraine SouthamIsobel D StewartCarol A WangYujie WangPeitao WuWeihua ZhangTarunveer S AhluwaliaEmil V R AppelLawrence F BielakJennifer A BrodyNoël P BurttClaudia P CabreraBrian E CadeJin Fang ChaiXiaoran ChaiLi-Ching ChangChien-Hsiun ChenBrian H ChenKumaraswamy Naidu ChitralaYen-Feng ChiuHugoline G de HaanGraciela E DelgadoAyse DemirkanQing DuanJorgen EngmannSegun A FatumoJavier GayánFranco GiulianiniJung Ho GongStefan GustafssonYang HaiFernando P HartwigJing HeYoriko HeianzaTao HuangAlicia Huerta-ChagoyaMi Yeong HwangRichard A JensenTakahisa KawaguchiKatherine A KentistouYoung Jin KimMarcus E KleberIshminder K KoonerShuiqing LaiLeslie A LangeCarl D LangefeldMarie LauzonMan LiSymen LigthartJun LiuMarie LohJirong LongValeriya LyssenkoMassimo ManginoCarola MarziMay E MontasserAbhishek NagMasahiro NakatochiDamia NoceRaymond NoordamGiorgio PistisMichael PreussLaura RaffieldLaura J Rasmussen-TorvikStephen S RichNeil R RobertsonRico RueediKathleen RyanSerena SannaRicha SaxenaKatharina E SchrautBengt SennbladKazuya SetohAlbert V SmithThomas SparsøRona J StrawbridgeFumihiko TakeuchiJingyi TanStella TrompetErik van den AkkerPeter J van der MostNiek VerweijMandy VogelHeming WangChaolong WangNan WangHelen R WarrenWanqing WenTom WilsgaardAndrew WongAndrew R WoodTian XieMohammad Hadi ZafarmandJing-Hua ZhaoWei ZhaoNajaf AminZorayr ArzumanyanArne AstrupStephan J L BakkerDamiano BaldassarreMarian BeekmanRichard N BergmanAlain BertoniMatthias BlüherLori L BonnycastleStefan R BornsteinDonald W BowdenQiuyin CaiArchie CampbellHarry CampbellYi Cheng ChangEco J C de GeusAbbas DehghanShufa DuGudny EiriksdottirAliki Eleni FarmakiMattias FrånbergChristian FuchsbergerYutang GaoAnette P GjesingAnuj GoelSohee HanCatharina A HartmanChristian HerderAndrew A HicksChang-Hsun HsiehWilla A HsuehSahoko IchiharaMichiya IgaseM Arfan IkramW Craig JohnsonMarit E JørgensenPeter K JoshiRita R KalyaniFouad R KandeelTomohiro KatsuyaChiea Chuen KhorWieland KiessIvana KolcicTeemu KuulasmaaJohanna KuusistoKristi LällKelvin LamDeborah A LawlorNanette R LeeRozenn N LemaitreHonglan Linull nullShih-Yi LinJaana LindströmAllan LinnebergJianjun LiuCarlos LorenzoTatsuaki MatsubaraFumihiko MatsudaGeltrude MingroneSimon MooijaartSanghoon MoonToru NabikaGirish N NadkarniJerry L NadlerMari NelisMatt J NevilleJill M NorrisYasumasa OhyagiAnnette PetersPatricia A PeyserOzren PolasekQibin QiDennis RavenDermot F ReillyAlex ReinerFernando RivideneiraKathryn RollIgor RudanCharumathi SabanayagamKevin 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GrimsgaardLeif GroopVilmundur GudnasonXiuqing GuoAnders HamstenTorben HansenCaroline HaywardSusan R HeckbertBernardo L HortaWei HuangErik IngelssonPankow S JamesMarjo-Ritta JarvelinJost B JonasJ Wouter JukemaPontiano KaleebuRobert KaplanSharon L R KardiaNorihiro KatoSirkka M Keinanen-KiukaanniemiBong-Jo KimMika KivimakiHeikki A KoistinenJaspal S KoonerAntje KörnerPeter KovacsDiana KuhMeena KumariZoltan KutalikMarkku LaaksoTimo A LakkaLenore J LaunerKarin LeanderHuaixing LiXu LinLars LindCecilia LindgrenSimin LiuRuth J F LoosPatrik K E MagnussonAnubha MahajanAndres MetspaluDennis O Mook-KanamoriTrevor A MoriPatricia B MunroeInger NjølstadJeffrey R O'ConnellAlbertine J OldehinkelKen K OngSandosh PadmanabhanColin N A PalmerNicholette D PalmerOluf PedersenCraig E PennellDavid J PorteousPeter P PramstallerMichael A ProvinceBruce M PsatyLu QiLeslie J RaffelRainer RauramaaSusan RedlinePaul M RidkerFrits R RosendaalTimo E SaaristoManjinder SandhuJouko SaramiesNeil SchneidermanPeter SchwarzLaura J ScottElizabeth SelvinPeter SeverXiao-Ou ShuP Eline SlagboomKerrin S SmallBlair H SmithHarold SniederTamar SoferThorkild I A SørensenTim D SpectorAlice StantonClaire J StevesMichael StumvollLiang SunYasuharu TabaraE Shyong TaiNicholas J TimpsonAnke TönjesJaakko TuomilehtoTeresa TusieMatti UusitupaPim van der HarstCornelia van DuijnVeronique VitartPeter VollenweiderTanja G M VrijkotteLynne E WagenknechtMark WalkerYa X WangNick J WarehamRichard M WatanabeHugh WatkinsWen B WeiAnanda R WickremasingheGonneke WillemsenJames F WilsonTien-Yin WongJer-Yuarn WuAnny H XiangLisa R YanekLoïc YengoMitsuhiro YokotaEleftheria ZegginiWei ZhengAlan B ZondermanJerome I RotterAnna L GloynMark I McCarthyJosée DupuisJames B MeigsRobert A ScottInga ProkopenkoAaron LeongChing-Ti LiuStephen C J ParkerKaren L MohlkeClaudia LangenbergEleanor WheelerAndrew P MorrisInês A Barrosonull nullPublished in: Nature genetics (2021)
Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10-8), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution.
Keyphrases
- type diabetes
- genome wide association study
- genome wide
- glycemic control
- blood glucose
- copy number
- gene expression
- genome wide association
- cardiovascular disease
- insulin resistance
- healthcare
- systematic review
- single cell
- meta analyses
- randomized controlled trial
- blood pressure
- skeletal muscle
- mental health
- deep learning
- mass spectrometry
- health information
- high density
- social media
- red blood cell