Mutations, Bottlenecks, and Clonal Sweeps: How Environmental Carcinogens and Genomic Changes Shape Clonal Evolution during Tumor Progression.
Melissa Q ReevesAllan BalmainPublished in: Cold Spring Harbor perspectives in medicine (2023)
The transition from a single, initiated cell to a full-blown malignant tumor involves significant genomic evolution. Exposure to carcinogens-whether directly mutagenic or not-can drive progression toward malignancy, as can stochastic acquisition of cancer-promoting genetic events. Mouse models using both carcinogens and germline genetic manipulations have enabled precise inquiry into the evolutionary dynamics that take place as a tumor progresses from benign to malignant to metastatic stages. Tumor progression is characterized by changes in somatic point mutations and copy-number alterations, even though any single tumor can itself have a high or low burden of genomic alterations. Further, lineage-tracing, single-cell analyses and CRISPR barcoding have revealed the distinct clonal dynamics within benign and malignant tumors. Application of these tools in a range of mouse models can shed unique light on the patterns of clonal evolution that take place in both mouse and human tumors.
Keyphrases
- copy number
- genome wide
- single cell
- mitochondrial dna
- dna methylation
- mouse model
- rna seq
- poor prognosis
- squamous cell carcinoma
- endothelial cells
- small cell lung cancer
- papillary thyroid
- crispr cas
- gene expression
- long non coding rna
- stem cells
- cell therapy
- risk factors
- oxidative stress
- human health
- dna repair
- induced pluripotent stem cells
- lymph node metastasis
- mesenchymal stem cells
- risk assessment
- childhood cancer