Artificial Intelligence Approach To Investigate the Longevity Drug.
Jun-Yan LiHsin-Yi ChenWen-Jie DaiQiu-Jie LvCalvin Yu-Chian ChenPublished in: The journal of physical chemistry letters (2019)
Longevity is a very important and interesting topic, and Klotho has been demonstrated to be related to longevity. We combined network pharmacology, machine learning, deep learning, and molecular dynamics (MD) simulation to investigate potent lead drugs. Related protein insulin-like growth factor 1 receptor (IGF1R) and insulin receptor (IR) were docked with the traditional Chinese medicine (TCM) database to screen out several novel candidates. Besides, nine different machine learning algorithms were performed to build reliable and accurate predicted models. Moreover, we used the novel deep learning algorithm to build predicted models. All of these models obtained significant R2, which are all greater than 0.87 on the training set and higher than 0.88 for the test set, respectively. The long time 500 ns molecular dynamics simulation was also performed to verify protein-ligand properties and stability. Finally, we obtained Antifebrile Dichroa, Holarrhena antidysenterica, and Gelsemium sempervirens, which might be potent TCMs for two targets.
Keyphrases
- artificial intelligence
- machine learning
- deep learning
- molecular dynamics
- molecular dynamics simulations
- big data
- convolutional neural network
- density functional theory
- binding protein
- drosophila melanogaster
- type diabetes
- high resolution
- molecular docking
- emergency department
- drug induced
- zika virus
- dengue virus
- high throughput
- anti inflammatory
- glycemic control
- amino acid
- mass spectrometry
- growth hormone
- signaling pathway
- adipose tissue