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Be 2+ Causes Hypersensitivity but Mg 2+ and Ca 2+ Do Not─Favorable Metal Coordination Is the Key for Differential Allosteric Modulation and Binding Affinities.

Gopika SabuSusmita De
Published in: The journal of physical chemistry. B (2023)
Although the ion selectivity of metalloproteins has been well established, selective metal antigen recognition by immunoproteins remains elusive. One such case is the recognition of the Be 2+ ion against its heavier congeners, Mg 2+ and Ca 2+ , by the human leukocyte antigen immunoprotein (HLA-DP2), leading to immunotoxicity. Integrating with our previous mechanistic study on Be 2+ toxicity, herein, we have explored the basis of characteristic nontoxicity of Mg 2+ and Ca 2+ ions despite their in vivo abundance. The ion binding cleft of the HLA-DP2-peptide complex is composed of four acidic residues, p4D and p7E from the peptide and β26E and β69E from the protein. While the tetrahedral coordination site of the smaller Be 2+ ion is located deep inside the cavity, hexa- to octa-coordination sites of Mg 2+ and Ca 2+ ions are located closer to the protein surface. The intrinsic high coordination number of Mg 2+ /Ca 2+ ions induces allosteric modifications on the HLA-DP2_M2 surface, which are atypical for TCR recognition. Furthermore, the lower binding energy of larger Mg 2+ and Ca 2+ ions with the cavity residues can be correlated to the lower charge density and reduced covalent bonding nature as compared to those of the smaller Be 2+ ion. In short, weak binding of Mg 2+ and Ca 2+ ions and the unfavorable allosteric surface modifications are probably the major determinants for the absence of Mg 2+ /Ca 2+ ion-mediated hypersensitivity in humans.
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