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A MassQL-Integrated Molecular Networking Approach for the Discovery and Substructure Annotation of Bioactive Cyclic Peptides.

Tim BergerJudith AlenfelderSophie A M SteinmüllerDominik HeimannNamrata GohainDaniel PetrasMingxun WangRobert BergerEvi KostenisRaphael Reher
Published in: Journal of natural products (2024)
The marine sponge-derived fungus Stachylidium bicolor 293 K04 is a prolific producer of specialized metabolites, including certain cyclic tetrapeptides called endolides, which are characterized by the presence of the unusual amino acid N -methyl-3-(3-furyl)-alanine. This rare feature can be used as bait to detect new endolide-like analogs through customized fragment pattern searches of tandem mass spectrometry data using the Mass Spec Query Language (MassQL). Here, we integrate endolide-specific MassQL queries with molecular networking to obtain substructural information guiding the targeted isolation and structure elucidation of the new proline-containing endolides E ( 1 ) and F ( 2 ). We showed that endolide F (but not E) is a moderate antagonist of the arginine vasopressin V 1A receptor, a member of the G protein-coupled receptor superfamily.
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