Long Non-Coding RNAs and Alzheimer's Disease: Towards Personalized Diagnosis.
Maria I Mosquera-HerediaOscar M VidalLuis C MoralesCarlos Silvera-RedondoErnesto BarcelóRicardo Francisco AllegriMauricio Arcos-BurgosJorge Iván VélezPilar Garavito-GalofrePublished in: International journal of molecular sciences (2024)
Alzheimer's disease (AD), a neurodegenerative disorder characterized by progressive cognitive decline, is the most common form of dementia. Currently, there is no single test that can diagnose AD, especially in understudied populations and developing countries. Instead, diagnosis is based on a combination of medical history, physical examination, cognitive testing, and brain imaging. Exosomes are extracellular nanovesicles, primarily composed of RNA, that participate in physiological processes related to AD pathogenesis such as cell proliferation, immune response, and neuronal and cardiovascular function. However, the identification and understanding of the potential role of long non-coding RNAs (lncRNAs) in AD diagnosis remain largely unexplored. Here, we clinically, cognitively, and genetically characterized a sample of 15 individuals diagnosed with AD (cases) and 15 controls from Barranquilla, Colombia. Advanced bioinformatics, analytics and Machine Learning (ML) techniques were used to identify lncRNAs differentially expressed between cases and controls. The expression of 28,909 lncRNAs was quantified. Of these, 18 were found to be differentially expressed and harbored in pivotal genes related to AD. Two lncRNAs, ENST00000608936 and ENST00000433747, show promise as diagnostic markers for AD, with ML models achieving > 95% sensitivity, specificity, and accuracy in both the training and testing datasets. These findings suggest that the expression profiles of lncRNAs could significantly contribute to advancing personalized AD diagnosis in this community, offering promising avenues for early detection and follow-up.
Keyphrases
- cognitive decline
- long non coding rna
- mild cognitive impairment
- poor prognosis
- machine learning
- immune response
- cell proliferation
- healthcare
- genome wide identification
- mental health
- network analysis
- big data
- genome wide analysis
- stem cells
- multiple sclerosis
- mesenchymal stem cells
- physical activity
- risk assessment
- deep learning
- white matter
- dna methylation
- signaling pathway
- bone marrow
- cerebral ischemia
- mass spectrometry
- blood brain barrier
- subarachnoid hemorrhage
- cognitive impairment
- transcription factor
- functional connectivity
- dendritic cells
- rna seq
- virtual reality
- human health