New Insights into the Regulatory Role of Ferroptosis in Ankylosing Spondylitis via Consensus Clustering of Ferroptosis-Related Genes and Weighted Gene Co-Expression Network Analysis.
Tianhua RongNingyi JiaBingxuan WuDacheng SangBaoge LiuPublished in: Genes (2022)
Background : The pathogenesis of ankylosing spondylitis (AS) remains undetermined. Ferroptosis is a newly discovered form of regulated cell death involved in multiple autoimmune diseases. Currently, there are no reports on the connection between ferroptosis and AS. Methods : AS samples from the Gene Expression Omnibus were divided into two subgroups using consensus clustering of ferroptosis-related genes (FRGs). Weighted gene co-expression network analysis (WGCNA) of the intergroup differentially expressed genes (DEGs) and protein-protein interaction (PPI) analysis of the key module were used to screen out hub genes. A multifactor regulatory network was then constructed based on hub genes. Results : The 52 AS patients in dataset GSE73754 were divided into cluster 1 ( n = 24) and cluster 2 ( n = 28). DEGs were mainly enriched in pathways related to mitochondria, ubiquitin, and neurodegeneration. Candidate hub genes, screened by PPI and WGCNA, were intersected. Subsequently, 12 overlapping genes were identified as definitive hub genes. A multifactor interaction network with 45 nodes and 150 edges was generated, comprising the 12 hub genes and 32 non-coding RNAs. Conclusions : AS can be divided into two subtypes according to FRG expression. Ferroptosis might play a regulatory role in AS. Tailoring treatment according to the ferroptosis status of AS patients can be a promising direction.
Keyphrases
- network analysis
- cell death
- bioinformatics analysis
- genome wide
- genome wide identification
- ankylosing spondylitis
- protein protein
- gene expression
- transcription factor
- end stage renal disease
- genome wide analysis
- poor prognosis
- newly diagnosed
- dna methylation
- cell cycle arrest
- chronic kidney disease
- ejection fraction
- rheumatoid arthritis
- small molecule
- copy number
- magnetic resonance
- peritoneal dialysis
- high throughput
- squamous cell carcinoma
- computed tomography
- single cell
- clinical practice
- cell proliferation
- locally advanced
- systemic lupus erythematosus
- patient reported