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Transcriptome-Based Screening of Candidate Low-Temperature-Associated Genes and Analysis of the BocARR-B Transcription Factor Gene Family in Kohlrabi ( Brassica oleracea L. var. caulorapa L.).

Shuanling BianDengkui ShaoQingsheng ZhaoQuanhui LiYanjing Ren
Published in: International journal of molecular sciences (2024)
Low temperature is a significant abiotic stress factor that not only impacts plant growth, development, yield, and quality but also constrains the geographical distribution of numerous wild plants. Kohlrabi ( Brassica oleracea L. var. caulorapa L.) belongs to the Brassicaceae family and has a short growing period. In this study, a total of 196,642 unigenes were obtained from kohlrabi seedlings at low temperatures; of these, 52,836 unigenes were identified as differentially expressed genes. Transcription factor family members ARR-B , C3H , B3-ARF , etc. that had a high correlation with biochemical indicators related to low temperature were identified. A total of nineteen BocARR-B genes (named BocARR-B1 - BocARR-B19 ) were obtained, and these genes were distributed unevenly across seven chromosomes. Nineteen BocARR-B genes searched four conserved motifs and were divided into three groups. The relative expression level analysis of 19 BocARR-B genes of kohlrabi showed obvious specificity in different tissues. This study lays a foundation and provides new insight to explain the low-temperature resistance mechanism and response pathways of kohlrabi. It also provides a theoretical basis for the functional analysis of 19 BocARR-B transcription factor gene family members.
Keyphrases
  • genome wide identification
  • transcription factor
  • genome wide
  • genome wide analysis
  • bioinformatics analysis
  • dna binding
  • poor prognosis
  • arabidopsis thaliana
  • plant growth
  • binding protein
  • stress induced