Early detection of unilateral ureteral obstruction by desorption electrospray ionization mass spectrometry.
Shibdas BanerjeeAnny Chuu-Yun WongXin YanBo WuHongjuan ZhaoRobert J TibshiraniRichard N ZareJames D BrooksPublished in: Scientific reports (2019)
Desorption electrospray ionization mass spectrometry (DESI-MS) is an emerging analytical tool for rapid in situ assessment of metabolomic profiles on tissue sections without tissue pretreatment or labeling. We applied DESI-MS to identify candidate metabolic biomarkers associated with kidney injury at the early stage. DESI-MS was performed on sections of kidneys from 80 mice over a time course following unilateral ureteral obstruction (UUO) and compared to sham controls. A predictive model of renal damage was constructed using the LASSO (least absolute shrinkage and selection operator) method. Levels of lipid and small metabolites were significantly altered and glycerophospholipids comprised a significant fraction of altered species. These changes correlate with altered expression of lipid metabolic genes, with most genes showing decreased expression. However, rapid upregulation of PG(22:6/22:6) level appeared to be a hitherto unknown feature of the metabolic shift observed in UUO. Using LASSO and SAM (significance analysis of microarrays), we identified a set of well-measured metabolites that accurately predicted UUO-induced renal damage that was detectable by 12 h after UUO, prior to apparent histological changes. Thus, DESI-MS could serve as a useful adjunct to histology in identifying renal damage and demonstrates early and broad changes in membrane associated lipids.
Keyphrases
- mass spectrometry
- liquid chromatography
- ms ms
- poor prognosis
- early stage
- high performance liquid chromatography
- capillary electrophoresis
- gas chromatography
- oxidative stress
- multiple sclerosis
- high resolution
- genome wide
- machine learning
- long non coding rna
- cell proliferation
- high glucose
- gene expression
- squamous cell carcinoma
- radiation therapy
- type diabetes
- magnetic resonance imaging
- diabetic rats
- clinical trial
- adipose tissue
- genome wide identification
- simultaneous determination
- binding protein
- genome wide analysis
- double blind
- insulin resistance
- skeletal muscle
- solid phase extraction
- contrast enhanced