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The interplay between asymmetric and symmetric DNA loop extrusion.

Edward J BaniganLeonid A Mirny
Published in: eLife (2020)
Chromosome compaction is essential for reliable transmission of genetic information. Experiments suggest that ∼1000-fold compaction is driven by condensin complexes that extrude chromatin loops, by progressively collecting chromatin fiber from one or both sides of the complex to form a growing loop. Theory indicates that symmetric two-sided loop extrusion can achieve such compaction, but recent single-molecule studies (Golfier et al., 2020) observed diverse dynamics of condensins that perform one-sided, symmetric two-sided, and asymmetric two-sided extrusion. We use simulations and theory to determine how these molecular properties lead to chromosome compaction. High compaction can be achieved if even a small fraction of condensins have two essential properties: a long residence time and the ability to perform two-sided (not necessarily symmetric) extrusion. In mixtures of condensins I and II, coupling two-sided extrusion and stable chromatin binding by condensin II promotes compaction. These results provide missing connections between single-molecule observations and chromosome-scale organization.
Keyphrases
  • single molecule
  • transcription factor
  • living cells
  • atomic force microscopy
  • genome wide
  • gene expression
  • dna damage
  • copy number
  • molecular dynamics
  • social media
  • binding protein
  • case control
  • cell free