Leonid A Mirny (L A Mirny, Leonid Mirny)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 50

Top Topics

Embryonic Stem Cells

Dna Methylation

Saccharomyces Cerevisiae

Top Venues

bioRxiv : the preprint server for biology

Nature structural & molecular biology

Nature communications

The Journal of cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Andrea Scelfo, Viviana Barra, Nezar Abdennur, George Spracklin, Florence Busato, Catalina Salinas-Luypaert, Elena Bonaiti, Guillaume Velasco, Frédéric Bonhomme, Anna Chipont, Andréa E Tijhuis, Diana Carolina Johanna Spierings, Coralie L Guerin, Paola Barbara Arimondo, Claire Francastel, Floris Foijer, Jorg Tost, Leonid A Mirny, Daniele Fachinetti
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization. The Journal of cell biology 223 (4) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Andrea Scelfo, Viviana Barra, Nezar Abdennur, George Spracklin, Florence Busato, Catalina Salinas-Luypaert, Elena Bonaiti, Guillaume Velasco, Frédéric Bonhomme, Anna Chipont, Andréa E Tijhuis, Diana Carolina Johanna Spierings, Coralie L Guerin, Paola Barbara Arimondo, Claire Francastel, Floris Foijer, Jorg Tost, Leonid A Mirny, Daniele Fachinetti
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization. The Journal of cell biology 223 (4) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
J Gil, E Navarrete, L F Rosin, N Chowdhury, S Abraham, G Cornilleau, E P Lei, Julien Mozziconacci, Leonid A Mirny, H Muller, Ines A Drinnenberg
Unique territorial and compartmental organization of chromosomes in the holocentric silkmoth. Research square (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Andrea Scelfo, Viviana Barra, Nezar Abdennur, George Spracklin, Florence Busato, Catalina Salinas-Luypaert, Elena Bonaiti, Guillaume Velasco, Frédéric Bonhomme, Anna Chipont, Andréa E Tijhuis, Diana Carolina Johanna Spierings, Coralie L Guerin, Paola Barbara Arimondo, Claire Francastel, Floris Foijer, Jorg Tost, Leonid A Mirny, Daniele Fachinetti
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization. The Journal of cell biology 223 (4) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Andrea Scelfo, Viviana Barra, Nezar Abdennur, George Spracklin, Florence Busato, Catalina Salinas-Luypaert, Elena Bonaiti, Guillaume Velasco, Frédéric Bonhomme, Anna Chipont, Andréa E Tijhuis, Diana Carolina Johanna Spierings, Coralie L Guerin, Paola Barbara Arimondo, Claire Francastel, Floris Foijer, Jorg Tost, Leonid A Mirny, Daniele Fachinetti
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization. The Journal of cell biology 223 (4) (2024)
Ines A Drinnenberg, Jose Gil, Emily Navarette, Leah Rosin, Neil Chowdhury, Sameer Abraham, Gaetan Cornilleau, Elissa Lei, Julien Mozziconacci, Leonid A Mirny, Heloise Muller
Unique territorial and compartmental organization of chromosomes in the holocentric silkmoth. Research square (2024)
Andrea Scelfo, Viviana Barra, Nezar Abdennur, George Spracklin, Florence Busato, Catalina Salinas-Luypaert, Elena Bonaiti, Guillaume Velasco, Frédéric Bonhomme, Anna Chipont, Andréa E Tijhuis, Diana Carolina Johanna Spierings, Coralie L Guerin, Paola Barbara Arimondo, Claire Francastel, Floris Foijer, Jorg Tost, Leonid A Mirny, Daniele Fachinetti
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization. The Journal of cell biology 223 (4) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Jeremy A Owen, Dino Osmanović, Leonid A Mirny
Design principles of 3D epigenetic memory systems. Science (New York, N.Y.) 382 (6672) (2023)
Edward J Banigan, Wen Tang, Aafke A van den Berg, Roman R Stocsits, Gordana Wutz, Hugo B Brand O, Georg A Busslinger, Jan-Michael Peters, Leonid A Mirny
Transcription shapes 3D chromatin organization by interacting with loop extrusion. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Aleksandra Galitsyna, Sergey V Ulianov, Nikolai S Bykov, Marina Veil, Meijiang Gao, Kristina Perevoschikova, Mikhail Gelfand, Sergey V Razin, Leonid A Mirny, Daria Onichtchouk
Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation. bioRxiv : the preprint server for biology (2023)
Edward J Banigan, Wen Tang, Aafke A van den Berg, Roman R Stocsits, Gordana Wutz, Hugo B Brand O, Georg A Busslinger, Jan-Michael Peters, Leonid A Mirny
Transcription shapes 3D chromatin organization by interacting with loop extrusion. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Edward J Banigan, Wen Tang, Aafke A van den Berg, Roman R Stocsits, Gordana Wutz, Hugo B Brand O, Georg A Busslinger, Jan-Michael Peters, Leonid A Mirny
Transcription shapes 3D chromatin organization by interacting with loop extrusion. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Sarah B Reiff, Andrew J Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander D Veit, Alexander K Balashov, Carl Vitzthum, William Ronchetti, Kent M Pitman, Jeremy Johnson, Shannon R Ehmsen, Peter Kerpedjiev, Nezar Abdennur, Maxim Imakaev, Serkan Utku Öztürk, Uğur Çamoğlu, Leonid A Mirny, Nils Gehlenborg, Burak Han Alver, Peter J Park
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nature communications 13 (1) (2022)
Bart J H Dequeker, Matthias J Scherr, Hugo B Brand O, Johanna Gassler, Sean Powell, Imre Gaspar, Ilya M Flyamer, Aleksandar Lalic, Wen Tang, Roman R Stocsits, Iain Finley Davidson, Jan-Michael Peters, Karl E Duderstadt, Leonid A Mirny, Kikuë Tachibana
MCM complexes are barriers that restrict cohesin-mediated loop extrusion. Nature 606 (7912) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Susanne Leidescher, Johannes Ribisel, Simon Ullrich, Yana Feodorova, Erica Hildebrand, Aleksandra A Galitsyna, Sebastian Bultmann, Stephanie Link, Katharina Thanisch, Christopher B Mulholland, Job Dekker, Heinrich Leonhardt, Leonid A Mirny, Irina Solovei
Spatial organization of transcribed eukaryotic genes. Nature cell biology 24 (3) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology (2022)
Sarah B Reiff, Andrew J Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander D Veit, Alexander K Balashov, Carl Vitzthum, William Ronchetti, Kent M Pitman, Jeremy Johnson, Shannon R Ehmsen, Peter Kerpedjiev, Nezar Abdennur, Maxim Imakaev, Serkan Utku Öztürk, Uğur Çamoğlu, Leonid A Mirny, Nils Gehlenborg, Burak Han Alver, Peter J Park
Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nature communications 13 (1) (2022)
Veer I P Keizer, Simon Grosse-Holz, Maxime Woringer, Laura Zambon, Koceila Aizel, Maud Bongaerts, Fanny Delille, Lorena Kolar-Znika, Vittore F Scolari, Sebastian Hoffmann, Edward J Banigan, Leonid A Mirny, Maxime Dahan, Daniele Fachinetti, Antoine Coulon
Live-cell micromanipulation of a genomic locus reveals interphase chromatin mechanics. Science (New York, N.Y.) 377 (6605) (2022)
Michele Gabriele, Hugo B Brand O, Simon Grosse-Holz, Asmita Jha, Gina M Dailey, Claudia Cattoglio, Tsung-Han S Hsieh, Leonid A Mirny, Christoph Zechner, Anders S Hansen
Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging. Science (New York, N.Y.) 376 (6592) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Hugo B Brand O, Zhongqing Ren, Xheni Karaboja, Leonid A Mirny, Xindan Wang
DNA-loop-extruding SMC complexes can traverse one another in vivo. Nature structural & molecular biology 28 (8) (2021)
Leonid A Mirny, Irina Solovei
Keeping chromatin in the loop(s). Nature reviews. Molecular cell biology 22 (7) (2021)
Betul Akgol Oksuz, Liyan Yang, Sameer Abraham, Sergey V Venev, Nils Krietenstein, Krishna Mohan Parsi, Hakan Ozadam, Marlies E Oomen, Ankita Nand, Hui Mao, Ryan M J Genga, René Maehr, Oliver J Rando, Leonid A Mirny, Johan H Gibcus, Job Dekker
Systematic evaluation of chromosome conformation capture assays. Nature methods 18 (9) (2021)
Edward J Banigan, Aafke A van den Berg, Hugo B Brand O, John F Marko, Leonid A Mirny
Chromosome organization by one-sided and two-sided loop extrusion. eLife 9 (2020)
Edward J Banigan, Leonid A Mirny
The interplay between asymmetric and symmetric DNA loop extrusion. eLife 9 (2020)
Elphѐge P Nora, Laura Caccianini, Geoffrey Fudenberg, Kevin So, Vasumathi Kameswaran, Abigail Nagle, Alec Uebersohn, Bassam Hajj, Agnès Le Saux, Antoine Coulon, Leonid A Mirny, Katherine S Pollard, Maxime Dahan, Benoit G Bruneau
Molecular basis of CTCF binding polarity in genome folding. Nature communications 11 (1) (2020)
Jelena Erceg, Jumana AlHaj Abed, Anton Goloborodko, Bryan R Lajoie, Geoffrey Fudenberg, Nezar Abdennur, Maxim Imakaev, Ruth B McCole, Son C Nguyen, Wren Saylor, Eric F Joyce, T Niroshini Senaratne, Mohammed A Hannan, Guy Nir, Job Dekker, Leonid A Mirny, C-Ting Wu
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature communications 10 (1) (2019)
Jumana AlHaj Abed, Jelena Erceg, Anton Goloborodko, Son C Nguyen, Ruth B McCole, Wren Saylor, Geoffrey Fudenberg, Bryan R Lajoie, Job Dekker, Leonid A Mirny, C-Ting Wu
Highly structured homolog pairing reflects functional organization of the Drosophila genome. Nature communications 10 (1) (2019)
Hugo B Brand O, Payel Paul, Aafke A van den Berg, David Z Rudner, Xindan Wang, Leonid A Mirny
RNA polymerases as moving barriers to condensin loop extrusion. Proceedings of the National Academy of Sciences of the United States of America 116 (41) (2019)
Johan H Gibcus, Kumiko Samejima, Anton Goloborodko, Itaru Samejima, Natalia Naumova, Johannes Nuebler, Masato T Kanemaki, Linfeng Xie, James R Paulson, William C Earnshaw, Leonid A Mirny, Job Dekker
A pathway for mitotic chromosome formation. Science (New York, N.Y.) 359 (6376) (2018)
Johannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur, Leonid A Mirny
Chromatin organization by an interplay of loop extrusion and compartmental segregation. Proceedings of the National Academy of Sciences of the United States of America 115 (29) (2018)
Angela M Phillips, Luna O Gonzalez, Emmanuel E Nekongo, Anna I Ponomarenko, Sean M McHugh, Vincent L Butty, Stuart S Levine, Yu-Shan Lin, Leonid A Mirny, Matthew D Shoulders
Host proteostasis modulates influenza evolution. eLife 6 (2017)
Johanna Gassler, Hugo B Brand O, Maxim Imakaev, Ilya M Flyamer, Sabrina Ladstätter, Wendy A Bickmore, Jan-Michael Peters, Leonid A Mirny, Kikuë Tachibana
A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture. The EMBO journal 36 (24) (2017)
Anton Goloborodko, Maxim V Imakaev, John F Marko, Leonid A Mirny
Compaction and segregation of sister chromatids via active loop extrusion. eLife 5 (2016)