The one-message-per-cell-cycle rule: A conserved minimum transcription level for essential genes.
Teresa W LoHan Kyou James ChoiDean HuangPaul A WigginsPublished in: bioRxiv : the preprint server for biology (2023)
The inherent stochasticity of cellular processes leads to significant cell-to-cell variation in protein abundance. Although this noise has already been characterized and modeled, its broader implications and significance remain unclear. In this paper, we revisit the noise model and identify the number of messages transcribed per cell cycle as the critical determinant of noise. In yeast, we demonstrate that this quantity predicts the non-canonical scaling of noise with protein abundance, as well as quantitatively predicting its magnitude. We then hypothesize that growth robustness requires an upper ceiling on noise for the expression of essential genes, corresponding to a lower floor on the transcription level. We show that just such a floor exists: a minimum transcription level of one message per cell cycle is conserved between three model organisms: Escherichia coli , yeast, and human. Furthermore, all three organisms transcribe the same number of messages per gene, per cell cycle. This common transcriptional program reveals that robustness to noise plays a central role in determining the expression level of a large fraction of essential genes, and that this fundamental optimal strategy is conserved from E. coli to human cells.
Keyphrases
- cell cycle
- transcription factor
- air pollution
- cell proliferation
- escherichia coli
- genome wide identification
- genome wide
- poor prognosis
- single cell
- binding protein
- cell therapy
- gene expression
- copy number
- bioinformatics analysis
- oxidative stress
- stem cells
- protein protein
- saccharomyces cerevisiae
- mesenchymal stem cells
- heat shock
- wastewater treatment
- biofilm formation