Rewiring cancer drivers to activate apoptosis.
Sai GourisankarAndrey KrokhotinWenzhi JiXiaofan LiuChiung-Ying ChangSamuel H KimZhengnian LiWendy WenderskiJuste M SimanauskaiteHaopeng YangHannes VogelTinghu ZhangMichael R GreenNathanael S GrayGerald R CrabtreePublished in: Nature (2023)
Genes that drive the proliferation, survival, invasion and metastasis of malignant cells have been identified for many human cancers 1-4 . Independent studies have identified cell death pathways that eliminate cells for the good of the organism 5,6 . The coexistence of cell death pathways with driver mutations suggests that the cancer driver could be rewired to activate cell death using chemical inducers of proximity (CIPs). Here we describe a new class of molecules called transcriptional/epigenetic CIPs (TCIPs) that recruit the endogenous cancer driver, or a downstream transcription factor, to the promoters of cell death genes, thereby activating their expression. We focused on diffuse large B cell lymphoma, in which the transcription factor B cell lymphoma 6 (BCL6) is deregulated 7 . BCL6 binds to the promoters of cell death genes and epigenetically suppresses their expression 8 . We produced TCIPs by covalently linking small molecules that bind BCL6 to those that bind to transcriptional activators that contribute to the oncogenic program, such as BRD4. The most potent molecule, TCIP1, increases binding of BRD4 by 50% over genomic BCL6-binding sites to produce transcriptional elongation at pro-apoptotic target genes within 15 min, while reducing binding of BRD4 over enhancers by only 10%, reflecting a gain-of-function mechanism. TCIP1 kills diffuse large B cell lymphoma cell lines, including chemotherapy-resistant, TP53-mutant lines, at EC 50 of 1-10 nM in 72 h and exhibits cell-specific and tissue-specific effects, capturing the combinatorial specificity inherent to transcription. The TCIP concept also has therapeutic applications in regulating the expression of genes for regenerative medicine and developmental disorders.
Keyphrases
- cell death
- cell cycle arrest
- diffuse large b cell lymphoma
- transcription factor
- genome wide identification
- papillary thyroid
- poor prognosis
- genome wide
- epstein barr virus
- dna binding
- bioinformatics analysis
- gene expression
- signaling pathway
- induced apoptosis
- binding protein
- squamous cell
- endothelial cells
- dna methylation
- lymph node metastasis
- stem cells
- single cell
- quality improvement
- genome wide analysis
- childhood cancer
- locally advanced
- radiation therapy
- heat shock
- squamous cell carcinoma
- cell therapy
- long non coding rna
- bone marrow
- young adults
- free survival
- cell proliferation