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Cofilin-Membrane Interactions: Electrostatic Effects in Phosphoinositide Lipid Binding.

Shikha PrakashAnjali KrishnaDurba Sengupta
Published in: Chemphyschem : a European journal of chemical physics and physical chemistry (2022)
The actin cytoskeleton interacts with the cell membrane primarily through the indirect interactions of actin-binding proteins such as cofilin-1. The molecular mechanisms underlying the specific interactions of cofilin-1 with membrane lipids are still unclear. Here, we performed coarse-grain molecular dynamics simulations of cofilin-1 with complex lipid bilayers to analyze the specificity of protein-lipid interactions. We observed the maximal interactions with phosphoinositide (PIP) lipids, especially PIP 2 and PIP 3 lipids. A good match was observed between the residues predicted to interact and previous experimental studies. The clustering of PIP lipids around the membrane bound protein leads to an overall lipid demixing and gives rise to persistent membrane curvature. Further, through a series of control simulations, we observe that both electrostatics and geometry are critical for specificity of lipid binding. Our current study is a step towards understanding the physico-chemical basis of cofilin-PIP lipid interactions.
Keyphrases
  • molecular dynamics simulations
  • fatty acid
  • binding protein
  • molecular dynamics
  • protein protein
  • small molecule
  • amino acid
  • single molecule