Improving metagenomic binning results with overlapped bins using assembly graphs.

Vijini G MallawaarachchiAnuradha S WickramarachchiYu Lin

Published in: Algorithms for molecular biology : AMB (2021)

GraphBin2 incorporates the coverage information into the assembly graph to refine the binning results obtained from existing binning tools. GraphBin2 also enables the detection of contigs that may belong to multiple species. We show that GraphBin2 outperforms its predecessor GraphBin on both simulated and real datasets. GraphBin2 is freely available at https://github.com/Vini2/GraphBin2 .

Keyphrases

loop mediated isothermal amplification
health information
label free
convolutional neural network
rna seq
real time pcr
affordable care act
social media
machine learning
health insurance
quantum dots