Vijini G Mallawaarachchi (Vijini Mallawaarachchi)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 18

Top Topics

Antimicrobial Resistance

Machine Learning

Single Molecule

Klebsiella Pneumoniae

Top Venues

bioRxiv : the preprint server for biology

Briefings in bioinformatics

Journal of computational biology : a journal of computational molecular cell biology

Algorithms for molecular biology : AMB

This page only lists publications with an associated author ORCID identifier.

Publications

Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Sarah K Giles, Susanna R Grigson, Przemyslaw Decewicz, George Spyro Bouras, Ryan D Hesse, Laura K Inglis, Abbey L K Hutton, Elizabeth A Dinsdale, Robert A Edwards
Phables: from fragmented assemblies to high-quality bacteriophage genomes. bioRxiv : the preprint server for biology (2023)
Bhavya Papudeshi, Alejandro A Vega, Cole Souza, Sarah K Giles, Vijini G Mallawaarachchi, Michael J Roach, Michelle An, Nicole Jacobson, Katelyn McNair, Maria Fernanda Mora, Karina Pastrana, Christopher Leigh, Clarice Cram, Will S Plewa, Susanna R Grigson, George Bouras, Przemys Çaw Decewicz, Antoni Luque, Lindsay Droit, Scott A Handley, Anca M Segall, Elizabeth A Dinsdale, Robert A Edwards
Novel crAssphage isolates exhibit conserved gene order and purifying selection of the host specificity protein. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Vijini G Mallawaarachchi, Yu Lin
Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs. Journal of computational biology : a journal of computational molecular cell biology (2022)
Vijini G Mallawaarachchi, Anuradha S Wickramarachchi, Yu Lin
Improving metagenomic binning results with overlapped bins using assembly graphs. Algorithms for molecular biology : AMB 16 (1) (2021)