Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373.
William R MorganAurélien TartarPublished in: Microbiology resource announcements (2023)
Scaffolds of a previously published Lagenidium giganteum ARSEF 373 genome assembly found at GenBank were filtered to remove contaminating sequences. Genome annotation of the 437 scaffolds (total length, 56.2 MB; GC content, 58.8%) with confirmed L. giganteum sequences identified 13,069 potential protein-coding genes, encoding at least 737 predicted secreted proteins and >100 putative translocated effectors.
Keyphrases
- genome wide
- tissue engineering
- rna seq
- dna methylation
- amino acid
- binding protein
- genetic diversity
- magnetic resonance imaging
- single cell
- genome wide analysis
- magnetic resonance
- randomized controlled trial
- risk assessment
- small molecule
- gene expression
- human health
- type iii
- bioinformatics analysis
- genome wide identification
- gas chromatography
- climate change
- transcription factor
- meta analyses
- systematic review