Transcriptome-Based Identification of the SaR2R3-MYB Gene Family in Sophora alopecuroides and Function Analysis of SaR2R3-MYB15 in Salt Stress Tolerance.
Yuan WangXiaoming YangYongning HuXinqian LiuTuya SharengGongxiang CaoYukun XingYuewen YangYinxiang LiWeili HuangZhibo WangGaowa BaiYuanyuan JiYuzhi WangPublished in: Plants (Basel, Switzerland) (2024)
As one of the most prominent gene families, R2R3-MYB transcription factors significantly regulate biochemical and physiological processes under salt stress. However, in Sophora alopecuroides , a perennial herb known for its exceptional saline alkali resistance, the comprehensive identification and characterization of SaR2R3-MYB genes and their potential functions in response to salt stress have yet to be determined. We investigated the expression profiles and biological functions of SaR2R3-MYB transcription factors in response to salt stress, utilizing a transcriptome-wide mining method. Our analysis identified 28 SaR2R3-MYB transcription factors, all sharing a highly conserved R2R3 domain, which were further divided into 28 subgroups through phylogenetic analysis. Some SaR2R3-MYB transcription factors showed induction under salt stress, with SaR2R3-MYB15 emerging as a potential regulator based on analysis of the protein-protein interaction network. Validation revealed the transcriptional activity and nuclear localization of SaR2R3-MYB15. Remarkably, overexpression of SaR2R3-MYB15 in transgenic plants could increase the activity of antioxidant enzymes and the accumulation of proline but decrease the content of malondialdehyde (MDA), compared with wild-type plants. Moreover, several salt stress-related genes showed higher expression levels in transgenic plants, implying their potential to enhance salt tolerance. Our findings shed light on the role of SaR2R3-MYB genes in salt tolerance in S. alopecuroides .
Keyphrases
- transcription factor
- genome wide identification
- dna binding
- genome wide
- stress induced
- single cell
- protein protein
- dna methylation
- small molecule
- poor prognosis
- oxidative stress
- climate change
- cell proliferation
- rna seq
- human health
- cell death
- signaling pathway
- wild type
- bioinformatics analysis
- heat stress
- genome wide analysis