BridgeDPI: a novel Graph Neural Network for predicting drug-protein interactions.

Yifan WuMin GaoMin ZengJie Zhang Min Li

Published in: Bioinformatics (Oxford, England) (2022)

The source code of BridgeDPI can be accessed at https://github.com/SenseTime-Knowledge-Mining/BridgeDPI. The source data used in this study is available on the https://github.com/IBM/InterpretableDTIP (for the BindingDB dataset), https://github.com/masashitsubaki/CPI_prediction (for the C.ELEGANS and HUMAN) datasets, http://dude.docking.org/ (for the DUD-E dataset), repectively.

Keyphrases

neural network
protein protein
endothelial cells
healthcare
molecular dynamics
electronic health record
small molecule
emergency department
big data
machine learning
rna seq
convolutional neural network
drug induced
artificial intelligence