Min Li

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 69

Top Topics

Major Depressive Disorder

Top Venues

Briefings in bioinformatics

Bioinformatics (Oxford, England)

Journal of chemical information and modeling

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Wenkang Wang, Yunyan Shuai, Qiurong Yang, Fuhao Zhang, Min Zeng, Min Li
A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches. Briefings in bioinformatics 25 (2) (2024)
Li Tang, Jiaqi Liao, Matthew C Hill, Jiaxin Hu, Yichao Zhao, Patrick T Ellinor, Min Li
MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops. Nucleic acids research 52 (5) (2024)
Lei Song, Huimin Zhu, Kaili Wang, Min Li
LGGA-MPP: Local Geometry-Guided Graph Attention for Molecular Property Prediction. Journal of chemical information and modeling 64 (8) (2024)
Hanyu Luo, Li Tang, Min Zeng, Rui Yin, Pingjian Ding, Lingyun Luo, Min Li
BertSNR: an interpretable deep learning framework for single-nucleotide resolution identification of transcription factor binding sites based on DNA language model. Bioinformatics (Oxford, England) 40 (8) (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Zhaoyu Fang, Ruiqing Zheng, Min Li
scMAE: a masked autoencoder for single-cell RNA-seq clustering. Bioinformatics (Oxford, England) 40 (1) (2024)
Li Tang, Jiaqi Liao, Matthew C Hill, Jiaxin Hu, Yichao Zhao, Patrick T Ellinor, Min Li
MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops. Nucleic acids research 52 (5) (2024)
Teng Liu, Zhaoyu Fang, Xin Li, Lining Zhang, Dong-Sheng Cao, Min Li, Mingzhu Yin
Assembling spatial clustering framework for heterogeneous spatial transcriptomics data with GRAPHDeep. Bioinformatics (Oxford, England) 40 (1) (2024)
Pengzhen Jia, Fuhao Zhang, Chaojin Wu, Min Li
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond. Briefings in bioinformatics 25 (3) (2024)
Lei Song, Huimin Zhu, Kaili Wang, Min Li
LGGA-MPP: Local Geometry-Guided Graph Attention for Molecular Property Prediction. Journal of chemical information and modeling 64 (8) (2024)
Yuxuan Chen, Ruiqing Zheng, Jin Liu, Min Li
scMLC: an accurate and robust multiplex community detection method for single-cell multi-omics data. Briefings in bioinformatics 25 (2) (2024)
Xiang Du, Xinliang Sun, Min Li
Knowledge Graph Convolutional Network with Heuristic Search for Drug Repositioning. Journal of chemical information and modeling 64 (12) (2024)
Pengzhen Jia, Fuhao Zhang, Chaojin Wu, Min Li
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond. Briefings in bioinformatics 25 (3) (2024)
Li Tang, Jiaqi Liao, Matthew C Hill, Jiaxin Hu, Yichao Zhao, Patrick T Ellinor, Min Li
MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops. Nucleic acids research 52 (5) (2024)
Zhaoyu Fang, Teng Liu, Ruiqing Zheng, Jin A, Mingzhu Yin, Min Li
stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics. Briefings in bioinformatics 25 (1) (2024)
Li Tang, Jiaqi Liao, Matthew C Hill, Jiaxin Hu, Yichao Zhao, Patrick T Ellinor, Min Li
MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops. Nucleic acids research (2024)
Teng Liu, Zhaoyu Fang, Xin Li, Lining Zhang, Dong-Sheng Cao, Min Li, Mingzhu Yin
Assembling spatial clustering framework for heterogeneous spatial transcriptomics data with GRAPHDeep. Bioinformatics (Oxford, England) 40 (1) (2024)
Zhaoyu Fang, Teng Liu, Ruiqing Zheng, Jin A, Mingzhu Yin, Min Li
stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics. Briefings in bioinformatics 25 (1) (2024)
Yichao Zhao, Ju Xiang, Xingyuan Shi, Pengzhen Jia, Yan Zhang, Min Li
MDDOmics: multi-omics resource of major depressive disorder. Database : the journal of biological databases and curation 2024 (2024)
Pengzhen Jia, Fuhao Zhang, Chaojin Wu, Min Li
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond. Briefings in bioinformatics 25 (3) (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Zhaoyu Fang, Ruiqing Zheng, Min Li
scMAE: a masked autoencoder for single-cell RNA-seq clustering. Bioinformatics (Oxford, England) 40 (1) (2024)
Zhaoyu Fang, Ruiqing Zheng, Min Li
scMAE: a masked autoencoder for single-cell RNA-seq clustering. Bioinformatics (Oxford, England) 40 (1) (2024)
Xiang Du, Xingliang Sun, Min Li
Knowledge Graph Convolutional Network with Heuristic Search for Drug Repositioning. Journal of chemical information and modeling (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Zhaoyu Fang, Teng Liu, Ruiqing Zheng, Jin A, Mingzhu Yin, Min Li
stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics. Briefings in bioinformatics 25 (1) (2024)
Lei Song, Huimin Zhu, Kaili Wang, Min Li
LGGA-MPP: Local Geometry-Guided Graph Attention for Molecular Property Prediction. Journal of chemical information and modeling (2024)
Zhaoyu Fang, Teng Liu, Ruiqing Zheng, Jin A, Mingzhu Yin, Min Li
stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics. Briefings in bioinformatics 25 (1) (2024)
Yichao Zhao, Ju Xiang, Xingyuan Shi, Pengzhen Jia, Yan Zhang, Min Li
MDDOmics: multi-omics resource of major depressive disorder. Database : the journal of biological databases and curation 2024 (2024)
Pengzhen Jia, Fuhao Zhang, Chaojin Wu, Min Li
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond. Briefings in bioinformatics 25 (3) (2024)
Lei Song, Huimin Zhu, Kaili Wang, Min Li
LGGA-MPP: Local Geometry-Guided Graph Attention for Molecular Property Prediction. Journal of chemical information and modeling 64 (8) (2024)
Hanyu Luo, Li Tang, Min Zeng, Rui Yin, Pingjian Ding, Lingyun Luo, Min Li
BertSNR: an interpretable deep learning framework for single-nucleotide resolution identification of transcription factor binding sites based on DNA language model. Bioinformatics (Oxford, England) 40 (8) (2024)
Yuxuan Chen, Ruiqing Zheng, Jin Liu, Min Li
scMLC: an accurate and robust multiplex community detection method for single-cell multi-omics data. Briefings in bioinformatics 25 (2) (2024)
Teng Liu, Zhaoyu Fang, Xin Li, Lining Zhang, Dong-Sheng Cao, Min Li, Mingzhu Yin
Assembling spatial clustering framework for heterogeneous spatial transcriptomics data with GRAPHDeep. Bioinformatics (Oxford, England) 40 (1) (2024)
Xiang Du, Xinliang Sun, Min Li
Knowledge Graph Convolutional Network with Heuristic Search for Drug Repositioning. Journal of chemical information and modeling (2024)
Hanyu Luo, Li Tang, Min Zeng, Rui Yin, Pingjian Ding, Lingyun Luo, Min Li
BertSNR: an interpretable deep learning framework for single-nucleotide resolution identification of transcription factor binding sites based on DNA language model. Bioinformatics (Oxford, England) 40 (8) (2024)
Lei Song, Huimin Zhu, Kaili Wang, Min Li
LGGA-MPP: Local Geometry-Guided Graph Attention for Molecular Property Prediction. Journal of chemical information and modeling 64 (8) (2024)
Yuxuan Chen, Ruiqing Zheng, Jin Liu, Min Li
scMLC: an accurate and robust multiplex community detection method for single-cell multi-omics data. Briefings in bioinformatics 25 (2) (2024)
Yongfan Ming, Wenkang Wang, Rui Yin, Min Zeng, Li Tang, Shizhe Tang, Min Li
A review of enzyme design in catalytic stability by artificial intelligence. Briefings in bioinformatics (2023)
Xuhua Yan, Ruiqing Zheng, Fang-Xiang Wu, Min Li
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity. Bioinformatics (Oxford, England) 39 (3) (2023)
Siqi Chen, Xuhua Yan, Ruiqing Zheng, Min Li
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data. Briefings in bioinformatics 24 (1) (2023)
Yanping Zeng, Yongxin He, Ruiqing Zheng, Min Li
Inferring single-cell gene regulatory network by non-redundant mutual information. Briefings in bioinformatics (2023)
Min Zeng, Yifan Wu, Yiming Li, Rui Yin, Chengqian Lu, Junwen Duan, Min Li
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism. Bioinformatics (Oxford, England) 39 (12) (2023)
Fuhao Zhang, Min Li, Jian Zhang, Lukasz Kurgan
HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins. Nucleic acids research 51 (5) (2023)
Fuhao Zhang, Min Li, Jian Zhang, Lukasz Kurgan
HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins. Nucleic acids research 51 (5) (2023)
Siqi Chen, Xuhua Yan, Ruiqing Zheng, Min Li
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data. Briefings in bioinformatics 24 (1) (2023)
Fuhao Zhang, Min Li, Jian Zhang, Lukasz Kurgan
HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins. Nucleic acids research 51 (5) (2023)
Min Li, Baoying Zhao, Rui Yin, Chengqian Lu, Fei Guo, Min Zeng
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation. Briefings in bioinformatics 24 (1) (2023)
Ze-Ying Feng, Xue-Hong Wu, Jun-Long Ma, Min Li, Ge-Fei He, Dong-Sheng Cao, Guo-Ping Yang
DKADE: a novel framework based on deep learning and knowledge graph for identifying adverse drug events and related medications. Briefings in bioinformatics (2023)
Huimin Zhu, Renyi Zhou, Dongsheng Cao, Jing Tang, Min Li
A pharmacophore-guided deep learning approach for bioactive molecular generation. Nature communications 14 (1) (2023)
Fuhao Zhang, Min Li, Jian Zhang, Lukasz Kurgan
HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins. Nucleic acids research (2023)
Xuhua Yan, Ruiqing Zheng, Fang-Xiang Wu, Min Li
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity. Bioinformatics (Oxford, England) 39 (3) (2023)
Min Li, Baoying Zhao, Rui Yin, Chengqian Lu, Fei Guo, Min Zeng
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation. Briefings in bioinformatics 24 (1) (2023)
Min Zeng, Yifan Wu, Yiming Li, Rui Yin, Chengqian Lu, Junwen Duan, Min Li
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism. Bioinformatics (Oxford, England) 39 (12) (2023)
Fuhao Zhang, Bi Zhao, Wenbo Shi, Min Li, Lukasz Kurgan
DeepDISOBind: accurate prediction of RNA-, DNA- and protein-binding intrinsically disordered residues with deep multi-task learning. Briefings in bioinformatics 23 (1) (2022)
Teng-Zhi Long, Shao-Hua Shi, Shao Liu, Ai-Ping Lu, Zhao-Qian Liu, Min Li, Ting-Jun Hou, Dong-Sheng Cao
Structural Analysis and Prediction of Hematotoxicity Using Deep Learning Approaches. Journal of chemical information and modeling (2022)
Ju Xiang, Xiangmao Meng, Yichao Zhao, Fang-Xiang Wu, Min Li
HyMM: hybrid method for disease-gene prediction by integrating multiscale module structure. Briefings in bioinformatics 23 (3) (2022)
Li Tang, Matthew C Hill, Patrick T Ellinor, Min Li
Bacon: a comprehensive computational benchmarking framework for evaluating targeted chromatin conformation capture-specific methodologies. Genome biology 23 (1) (2022)
Siqi Chen, Xuhua Yan, Ruiqing Zheng, Min Li
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data. Briefings in bioinformatics (2022)
Yifan Wu, Min Gao, Min Zeng, Jie Zhang, Min Li
BridgeDPI: a novel Graph Neural Network for predicting drug-protein interactions. Bioinformatics (Oxford, England) 38 (9) (2022)
Li Tang, Zhizhou Zhong, Yisheng Lin, Yifei Yang, Jun Wang, James F Martin, Min Li
EPIXplorer: A web server for prediction, analysis and visualization of enhancer-promoter interactions. Nucleic acids research (2022)
Xingyi Li, Min Li, Ju Xiang, Zhelin Zhao, Xuequn Shang
SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data. Bioinformatics (Oxford, England) 38 (9) (2022)
Min Li, Baoying Zhao, Rui Yin, Chengqian Lu, Fei Guo, Min Zeng
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation. Briefings in bioinformatics (2022)
Kaili Wang, Renyi Zhou, Yifan Wu, Min Li
RLBind: a deep learning method to predict RNA-ligand binding sites. Briefings in bioinformatics (2022)
Kaili Wang, Renyi Zhou, Yaohang Li, Min Li
DeepDTAF: a deep learning method to predict protein-ligand binding affinity. Briefings in bioinformatics 22 (5) (2021)
Min Zeng, Yifan Wu, Chengqian Lu, Fuhao Zhang, Fang-Xiang Wu, Min Li
DeepLncLoc: a deep learning framework for long non-coding RNA subcellular localization prediction based on subsequence embedding. Briefings in bioinformatics (2021)
Ju Xiang, Jiashuai Zhang, Ruiqing Zheng, Xingyi Li, Min Li
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction. Briefings in bioinformatics 22 (5) (2021)
Xinyu Hu, Li Tang, Linconghua Wang, Fang-Xiang Wu, Min Li
MADA: a web service for analysing DNA methylation array data. BMC bioinformatics 21 (Suppl 6) (2020)
Min Li, Li Tang, Fang-Xiang Wu, Yi Pan, Jianxin Wang
CSA: a web service for the complete process of ChIP-Seq analysis. BMC bioinformatics 20 (Suppl 15) (2019)