The ethylene-responsive transcription factor ERF024 is a novel regulator of climacteric fruit ripening in melon.
Miguel Santo DomingoLuis OrduñaDavid NavarroCarlos MayobreAntonio SantiagoLaura ValverdeKonstantinos G AlexiouJosé Tomás MatusMarta PujolJordi Garcia-MasPublished in: The Plant journal : for cell and molecular biology (2024)
Fruit ripening is an essential developmental stage in Angiosperms triggered by hormonal signals such as ethylene, a major player in climacteric ripening. Melon is a unique crop showing both climacteric and non-climacteric cultivars, offering an ideal model for dissecting the genetic mechanisms underpinning this process. The major quantitative trait locus ETHQV8.1 was previously identified as a key regulator of melon fruit ripening. Here, we narrowed down ETHQV8.1 to a precise genomic region containing a single gene, the transcription factor CmERF024. Functional validation using CRISPR/Cas9 knock-out plants unequivocally identified CmERF024 as the causal gene governing ETHQV8.1. The erf024 mutants exhibited suppression of ethylene production, leading to a significant delay and attenuation of fruit ripening. Integrative multi-omic analyses encompassing RNA-seq, DAP-seq, and DNase-seq revealed the association of CmERF024 with chromatin accessibility and gene expression dynamics throughout fruit ripening. Our data suggest CmERF024 as a novel regulator of climacteric fruit ripening in melon.
Keyphrases
- transcription factor
- rna seq
- genome wide
- single cell
- genome wide identification
- gene expression
- copy number
- crispr cas
- dna binding
- dna methylation
- climate change
- genome editing
- type diabetes
- dna damage
- deep learning
- mass spectrometry
- cancer therapy
- machine learning
- insulin resistance
- network analysis
- metabolic syndrome
- big data
- genome wide analysis