Statistical analysis of ENDOR spectra.
Yvo PokernBenjamin EltznerStephan F HuckemannClemens BeekenJoAnne StubbeIgor TkachMarina BennatiMarkus HillerPublished in: Proceedings of the National Academy of Sciences of the United States of America (2021)
Electron-nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with 1H/2H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches.
Keyphrases
- density functional theory
- molecular dynamics
- optical coherence tomography
- amino acid
- escherichia coli
- energy transfer
- electron transfer
- dual energy
- solar cells
- smoking cessation
- high resolution
- human milk
- single molecule
- public health
- electron microscopy
- molecular docking
- minimally invasive
- magnetic resonance
- single cell
- cross sectional
- computed tomography
- health information
- preterm infants
- staphylococcus aureus
- cystic fibrosis
- pseudomonas aeruginosa
- biofilm formation
- radiofrequency ablation
- binding protein
- data analysis
- tandem mass spectrometry
- solid state
- monte carlo