Login / Signup

Gaussian curvature and the budding kinetics of enveloped viruses.

Sanjay DharmavaramSelene Baochen SheGuillermo LázaroMichael Francis HaganRobijn Bruinsma
Published in: PLoS computational biology (2019)
The formation of a membrane-enveloped virus starts with the assembly of a curved layer of capsid proteins lining the interior of the plasma membrane (PM) of the host cell. This layer develops into a spherical shell (capsid) enveloped by a lipid-rich membrane. In many cases, the budding process stalls prior to the release of the virus. Recently, Brownian dynamics simulations of a coarse-grained model system reproduced protracted pausing and stalling, which suggests that the origin of pausing/stalling is to be found in the physics of the budding process. Here, we propose that the pausing/stalling observed in the simulations can be understood as a purely kinetic phenomenon associated with the neck geometry. A geometrical potential energy barrier develops during the budding that must be overcome by capsid proteins diffusing along the membrane prior to incorporation into the capsid. The barrier is generated by a conflict between the positive Gauss curvature of the assembling capsid and the negative Gauss curvature of the neck region. A continuum theory description is proposed and is compared with the Brownian simulations of the budding of enveloped viruses.
Keyphrases
  • molecular dynamics
  • monte carlo
  • single cell
  • particulate matter
  • risk assessment
  • fatty acid
  • bone marrow
  • polycyclic aromatic hydrocarbons