Sensitive Detection of Structural Differences using a Statistical Framework for Comparative Crystallography.
Doeke R HekstraHarrison K WangMargaret A KlurezaJack B GreismanKevin M DaltonPublished in: bioRxiv : the preprint server for biology (2024)
Chemical and conformational changes underlie the functional cycles of proteins. Comparative crystallography can reveal these changes over time, over ligands, and over chemical and physical perturbations in atomic detail. A key difficulty, however, is that the resulting observations must be placed on the same scale by correcting for experimental factors. We recently introduced a Bayesian framework for correcting (scaling) X-ray diffraction data by combining deep learning with statistical priors informed by crystallographic theory. To scale comparative crystallography data, we here combine this framework with a multivariate statistical theory of comparative crystallography. By doing so, we find strong improvements in the detection of protein dynamics, element-specific anomalous signal, and the binding of drug fragments.
Keyphrases
- sensitive detection
- deep learning
- electronic health record
- loop mediated isothermal amplification
- physical activity
- emergency department
- data analysis
- molecular dynamics
- magnetic resonance imaging
- magnetic resonance
- gene expression
- single molecule
- computed tomography
- molecular dynamics simulations
- artificial intelligence
- amino acid
- drug induced
- label free
- crystal structure
- contrast enhanced