Aging and comprehensive molecular profiling in acute myeloid leukemia.
Jian-Feng LiWen-Yan ChengXiang-Jie LinLi-Jun WenKai WangYong-Mei ZhuHong-Ming ZhuXin-Jie ChenYu-Liang ZhangWei YinJia-Nan ZhangXiao YiFan ZhangXiang-Qin WengSheng-Yue WangLu JiangHui-Yi WuJia-Qi RenXiao-Jing LinNiu QiaoYu-Ting DaiHai FangYun TanXiao-Jian SunGang LvXiao-Yu YanSu-Ning ChenSaijuan ChenJie JinDe-Pei WuRui-Bao RenSai-Juan ChenYang ShenPublished in: Proceedings of the National Academy of Sciences of the United States of America (2024)
Acute myeloid leukemia (AML) is an aging-related and heterogeneous hematopoietic malignancy. In this study, a total of 1,474 newly diagnosed AML patients with RNA sequencing data were enrolled, and targeted or whole exome sequencing data were obtained in 94% cases. The correlation of aging-related factors including age and clonal hematopoiesis (CH), gender, and genomic/transcriptomic profiles (gene fusions, genetic mutations, and gene expression networks or pathways) was systematically analyzed. Overall, AML patients aged 60 y and older showed an apparently dismal prognosis. Alongside age, the frequency of gene fusions defined in the World Health Organization classification decreased, while the positive rate of gene mutations, especially CH-related ones, increased. Additionally, the number of genetic mutations was higher in gene fusion-negative (GF-) patients than those with GF. Based on the status of CH- and myelodysplastic syndromes (MDS)-related mutations, three mutant subgroups were identified among the GF- AML cohort, namely, CH-AML, CH-MDS-AML, and other GF- AML. Notably, CH-MDS-AML demonstrated a predominance of elderly and male cases, cytopenia, and significantly adverse clinical outcomes. Besides, gene expression networks including HOXA / B , platelet factors, and inflammatory responses were most striking features associated with aging and poor prognosis in AML. Our work has thus unraveled the intricate regulatory circuitry of interactions among different age, gender, and molecular groups of AML.
Keyphrases
- acute myeloid leukemia
- newly diagnosed
- allogeneic hematopoietic stem cell transplantation
- gene expression
- poor prognosis
- copy number
- end stage renal disease
- genome wide
- room temperature
- dna methylation
- ejection fraction
- long non coding rna
- chronic kidney disease
- mental health
- deep learning
- peritoneal dialysis
- prognostic factors
- electronic health record
- drug delivery
- bone marrow
- genome wide identification
- community dwelling
- single molecule
- wild type
- adverse drug