Zinc Finger-Homeodomain Transcriptional Factors (ZHDs) in Cucumber ( Cucumis sativus L.): Identification, Evolution, Expression Profiles, and Function under Abiotic Stresses.
Yiming GaoLiyan ZhuMenghang AnYaru WangSen LiYuming DongSonglin YangKexin ShiShanshan FanXiaofeng ChenHuazhong RenXingwang LiuPublished in: International journal of molecular sciences (2024)
Cucumber ( Cucumis sativus L.) is a globally prevalent and extensively cultivated vegetable whose yield is significantly influenced by various abiotic stresses, including drought, heat, and salinity. Transcription factors, such as zinc finger-homeodomain proteins (ZHDs), a plant-specific subgroup of Homeobox, play a crucial regulatory role in stress resistance. In this study, we identified 13 CsZHDs distributed across all six cucumber chromosomes except chromosome 7. Phylogenetic analysis classified these genes into five clades (ZHDI-IV and MIF) with different gene structures but similar conserved motifs. Collinearity analysis revealed that members of clades ZHD III, IV, and MIF experienced amplification through segmental duplication events. Additionally, a closer evolutionary relationship was observed between the ZHDs in Cucumis sativus ( C. sativus ) and Arabidopsis thaliana (A. thaliana) compared to Oryza sativa ( O. sativa ). Quantitative real-time PCR (qRT-PCR) analysis demonstrated the general expression of CsZHD genes across all tissues, with notable expression in leaf and flower buds. Moreover, most of the CsZHDs , particularly CsZHD9-11 , exhibited varying responses to drought, heat, and salt stresses. Virus-induced gene silencing (VIGS) experiments highlighted the potential functions of CsZHD9 and CsZHD10 , suggesting their positive regulation of stomatal movement and responsiveness to drought stress. In summary, these findings provide a valuable resource for future analysis of potential mechanisms underlying CsZHD genes in response to stresses.
Keyphrases
- transcription factor
- genome wide identification
- arabidopsis thaliana
- genome wide
- real time pcr
- poor prognosis
- heat stress
- bioinformatics analysis
- dna binding
- climate change
- gene expression
- high resolution
- genome wide analysis
- copy number
- multidrug resistant
- dna methylation
- risk assessment
- phase iii
- oxidative stress
- open label
- human health
- high glucose
- stress induced
- long non coding rna
- double blind
- diabetic rats
- neural network
- current status