Multi-Omic Admission-Based Prognostic Biomarkers Identified by Machine Learning Algorithms Predict Patient Recovery and 30-Day Survival in Trauma Patients.
Sultan S AbdelhamidJacob SciosciaYoram VodovotzJunru WuAnna RosengartEunseo SungSyed RahmanRobert VoinchetJillian BonarotiShimena LiJennifer L DarbyUpendra K KarMatthew D NealJason SperryJishnu DasTimothy R BilliarPublished in: Metabolites (2022)
Admission-based circulating biomarkers for the prediction of outcomes in trauma patients could be useful for clinical decision support. It is unknown which molecular classes of biomolecules can contribute biomarkers to predictive modeling. Here, we analyzed a large multi-omic database of over 8500 markers (proteomics, metabolomics, and lipidomics) to identify prognostic biomarkers in the circulating compartment for adverse outcomes, including mortality and slow recovery, in severely injured trauma patients. Admission plasma samples from patients ( n = 129) enrolled in the Prehospital Air Medical Plasma (PAMPer) trial were analyzed using mass spectrometry (metabolomics and lipidomics) and aptamer-based (proteomics) assays. Biomarkers were selected via Least Absolute Shrinkage and Selection Operator (LASSO) regression modeling and machine learning analysis. A combination of five proteins from the proteomic layer was best at discriminating resolvers from non-resolvers from critical illness with an Area Under the Receiver Operating Characteristic curve (AUC) of 0.74, while 26 multi-omic features predicted 30-day survival with an AUC of 0.77. Patients with traumatic brain injury as part of their injury complex had a unique subset of features that predicted 30-day survival. Our findings indicate that multi-omic analyses can identify novel admission-based prognostic biomarkers for outcomes in trauma patients. Unique biomarker discovery also has the potential to provide biologic insights.
Keyphrases
- trauma patients
- mass spectrometry
- machine learning
- emergency department
- traumatic brain injury
- clinical decision support
- healthcare
- end stage renal disease
- clinical trial
- rheumatoid arthritis
- liquid chromatography
- high throughput
- gold nanoparticles
- chronic kidney disease
- randomized controlled trial
- ejection fraction
- artificial intelligence
- free survival
- coronary artery disease
- deep learning
- high performance liquid chromatography
- study protocol
- prognostic factors
- risk assessment
- gas chromatography
- phase iii
- weight loss
- case report
- sensitive detection
- data analysis
- solid phase extraction
- glycemic control