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Signatures of ecological processes in microbial community time series.

Karoline FaustFranziska BauchingerBéatrice LarocheSophie de BuylLeo LahtiAlex D WashburneDidier GonzeStefanie Widder
Published in: Microbiome (2018)
We present a fast and robust scheme to classify community structure and to assess the prevalence of interactions directly from microbial time series data. The procedure not only serves to determine ecological drivers of microbial dynamics, but also to guide selection of appropriate community models for prediction and follow-up analysis.
Keyphrases
  • microbial community
  • antibiotic resistance genes
  • climate change
  • human health
  • mental health
  • healthcare
  • risk factors
  • electronic health record
  • risk assessment
  • machine learning
  • gene expression
  • dna methylation