Karoline Faust

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 29

Top Topics

Network Analysis

Saccharomyces Cerevisiae

Microbial Community

Top Venues

The ISME journal

BMC bioinformatics

ISME communications

This page only lists publications with an associated author ORCID identifier.

Publications

Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
Predicting microbial interactions with approaches based on flux balance analysis: an evaluation. BMC bioinformatics 25 (1) (2024)
Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
Predicting microbial interactions with approaches based on flux balance analysis: an evaluation. BMC bioinformatics 25 (1) (2024)
Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
Predicting microbial interactions with approaches based on flux balance analysis: an evaluation. BMC bioinformatics 25 (1) (2024)
Mathias Bonal, Lise Goetghebuer, Clémence Joseph, Didier Gonze, Karoline Faust, Isabelle F George
Deciphering Interactions Within a 4-Strain Riverine Bacterial Community. Current microbiology 80 (8) (2023)
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Technical versus biological variability in a synthetic human gut community. Gut microbes 15 (1) (2023)
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Technical versus biological variability in a synthetic human gut community. Gut microbes 15 (1) (2023)
Bin Liu, Daniel Rios Garza, Didier Gonze, Anna Krzynowek, Kenneth Simoens, Kristel Bernaerts, Annelies Geirnaert, Karoline Faust
Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis. The ISME journal (2023)
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Technical versus biological variability in a synthetic human gut community. Gut microbes 15 (1) (2023)
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Technical versus biological variability in a synthetic human gut community. Gut microbes 15 (1) (2023)
Charlotte C van de Velde, Clémence Joseph, Anaïs Biclot, Geert R B Huys, Vitor B Pinheiro, Kristel Bernaerts, Jeroen Raes, Karoline Faust
Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification. ISME communications 2 (1) (2022)
Leen Beller, Ward Deboutte, Sara Vieira-Silva, Gwen Falony, Raul Yhossef Tito, Leen Rymenans, Claude Kwe Yinda, Bert Vanmechelen, Lore Van Espen, Daan Jansen, Chenyan Shi, Mark Zeller, Piet Maes, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens
The virota and its transkingdom interactions in the healthy infant gut. Proceedings of the National Academy of Sciences of the United States of America 119 (13) (2022)
Moein Khalighi, Guilhem Sommeria-Klein, Didier Gonze, Karoline Faust, Leo Lahti
Quantifying the impact of ecological memory on the dynamics of interacting communities. PLoS computational biology 18 (6) (2022)
Tessa Gryp, Karoline Faust, Wim Van Biesen, Geert R B Huys, Francis Verbeke, Marijn M Speeckaert, Jeroen Raes, Mario Vaneechoutte, Marie Joossens, Griet Glorieux
Gut Microbiome Profiling Uncovers a Lower Abundance of Butyricicoccus in Advanced Stages of Chronic Kidney Disease. Journal of personalized medicine 11 (11) (2021)
Karoline Faust
Open challenges for microbial network construction and analysis. The ISME journal 15 (11) (2021)
Lisa Röttjers, Karoline Faust
Fast and flexible analysis of linked microbiome data with mako. Nature methods (2021)
Lisa Röttjers, Doris Vandeputte, Jeroen Raes, Karoline Faust
Null-model-based network comparison reveals core associations. ISME communications 1 (1) (2021)
Doris Vandeputte, Lindsey De Commer, Raul Yhossef Tito Tadeo, Gunter Kathagen, João Sabino, Séverine Vermeire, Karoline Faust, Jeroen Raes
Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nature communications 12 (1) (2021)
Susana Martínez Arbas, Shaman Narayanasamy, Malte Herold, Laura A Lebrun, Michael R Hoopmann, Sujun Li, Tony J Lam, Benoit Josef Kunath, Nathan D Hicks, Cindy Meng-Hsin Liu, Lance B Price, Cédric Christian Laczny, John D Gillece, James M Schupp, Paul S Keim, Robert L Moritz, Karoline Faust, Haixu Tang, Yuzhen Ye, Alexander Skupin, Patrick May, Emilie E L Muller, Paul Wilmes
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature microbiology 6 (1) (2020)
Lisa Röttjers, Karoline Faust
manta: a Clustering Algorithm for Weighted Ecological Networks. mSystems 5 (1) (2020)
Karoline Faust
Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration. mSystems 4 (3) (2019)
Kevin D'hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Verónica Lloréns-Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes
Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. eLife 8 (2019)
Gino Vrancken, Ann C Gregory, Geert R B Huys, Karoline Faust, Jeroen Raes
Synthetic ecology of the human gut microbiota. Nature reviews. Microbiology 17 (12) (2019)
Andrew J McBain, Catherine A O'Neill, Alejandro Amezquita, Laura J Price, Karoline Faust, Adrian Tett, Nicola Segata, Jonathan R Swann, Adrian M Smith, Barry Murphy, Michael Hoptroff, Gordon James, Yugandhar Reddy, Anindya Dasgupta, Tom Ross, Iain L Chapple, William G Wade, Judith Fernandez-Piquer
Consumer Safety Considerations of Skin and Oral Microbiome Perturbation. Clinical microbiology reviews 32 (4) (2019)
Lisa Röttjers, Karoline Faust
Can we predict keystones? Nature reviews. Microbiology 17 (3) (2019)
Stefan Vet, Sophie de Buyl, Karoline Faust, Jan Danckaert, Didier Gonze, Lendert Gelens
Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations. PloS one 13 (6) (2018)
Kevin D'hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Veronica Lloréns-Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes
Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. eLife 7 (2018)
Bin Ma, Kankan Zhao, Xiaofei Lv, Weiqin Su, Zhongmin Dai, Jack A Gilbert, Philip C Brookes, Karoline Faust, Jianming Xu
Genetic correlation network prediction of forest soil microbial functional organization. The ISME journal 12 (10) (2018)
Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D Washburne, Didier Gonze, Stefanie Widder
Signatures of ecological processes in microbial community time series. Microbiome 6 (1) (2018)
Sophie Weiss, Will Van Treuren, Catherine A Lozupone, Karoline Faust, Jonathan Friedman, Ye Deng, Li Charlie Xia, Zhenjiang Zech Xu, Luke Ursell, Eric J Alm, Amanda Birmingham, Jacob A Cram, Jed A Fuhrman, Jeroen Raes, Fengzhu Sun, Jizhong Zhou, Rob Knight
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The ISME journal 10 (7) (2016)