Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
Abozar GhorbaniKeramatollah IzadpanahRalf Georg DietzgenPublished in: PloS one (2018)
Approximately 42 million clean reads for each treatment were obtained. In MIMV-infected maize compared to uninfected plants, 1689 transcripts were up-regulated and 213 transcripts were down-regulated. In response to MIMV infection, several pathways were activated in maize including immune receptor signaling, metabolic pathways, RNA silencing, hormone-mediated pathways, protein degradation, protein kinase and ATP binding activity, and fatty acid metabolism. Also, several transcripts including those encoding hydrophobic protein RCI2B, adenosylmethionine decarboxylase NAC transcription factor and nucleic acid binding, leucine-rich repeat, heat shock protein, 26S proteasome, oxidoreductases and endonuclease activity protein were up-regulated. These data will contribute to the identification of genes and pathways involved in plant-virus interactions that may serve as future targets for improved disease control.
Keyphrases
- transcription factor
- nucleic acid
- heat shock protein
- dna binding
- binding protein
- protein protein
- fatty acid
- genome wide identification
- protein kinase
- genome wide
- amino acid
- hiv infected
- bioinformatics analysis
- big data
- electronic health record
- current status
- dna repair
- rna seq
- machine learning
- heat shock
- replacement therapy