Potential of Epidermal Growth Factor-like Peptide from the Sea Cucumber Stichopus horrens to Increase the Growth of Human Cells: In Silico Molecular Docking Approach.
Nur Shazwani Mohd PilusAzira MuhamadMuhammad Ashraf ShahidanNurul Yuziana Mohd YusofPublished in: Marine drugs (2022)
The sea cucumber is prominent as a traditional remedy among Asians for wound healing due to its high capacity for regeneration after expulsion of its internal organs. A short peptide consisting of 45 amino acids from transcriptome data of Stichopus horrens (Sh-EGFl-1) shows a convincing capability to promote the growth of human melanoma cells. Molecular docking of Sh-EGFl-1 peptide with human epidermal growth factor receptor (hEGFR) exhibited a favorable intermolecular interaction, where most of the Sh-EGFl-1 residues interacted with calcium binding-like domains. A superimposed image of the docked structure against a human EGF-EGFR crystal model also gave an acceptable root mean square deviation (RMSD) value of less than 1.5 Å. Human cell growth was significantly improved by Sh-EGFl-1 peptide at a lower concentration in a cell proliferation assay. Gene expression profiling of the cells indicated that Sh-EGFl-1 has activates hEGFR through five epidermal growth factor signaling pathways; phosphoinositide 3-kinase (PI3K), mitogen-activated protein kinase (MAPK), phospholipase C gamma (PLC-gamma), Janus kinase-signal transducer and activator of transcription (JAK-STAT) and Ras homologous (Rho) pathways. All these pathways triggered cells' proliferation, differentiation, survival and re-organization of the actin cytoskeleton. Overall, this marine-derived, bioactive peptide has the capability to promote proliferation and could be further explored as a cell-growth-promoting agent for biomedical and bioprocessing applications.
Keyphrases
- growth factor
- molecular docking
- endothelial cells
- epidermal growth factor receptor
- signaling pathway
- tyrosine kinase
- induced apoptosis
- induced pluripotent stem cells
- cell proliferation
- wound healing
- pluripotent stem cells
- molecular dynamics simulations
- genome wide
- protein kinase
- stem cells
- oxidative stress
- pi k akt
- gene expression
- cell cycle arrest
- transcription factor
- immune response
- amino acid
- single cell
- machine learning
- electronic health record
- copy number
- dna repair
- deep learning
- climate change
- quantum dots