Dissecting the genetic landscape of GPCR signaling through phenotypic profiling in C. elegans.
Longjun PuJing WangQiongxuan LuLars NilssonAlison PhilbrookAnjali PandeyLina ZhaoRobin van SchendelAlan KohTanara V PeresWeheliye H HashiSi Lhyam MyintChloe WilliamsJonathan D GilthorpeSun Nyunt WaiAndre BrownMarcel TijstermanPiali SenguptaJohan HenrikssonChangchun ChenPublished in: Nature communications (2023)
G protein-coupled receptors (GPCRs) mediate responses to various extracellular and intracellular cues. However, the large number of GPCR genes and their substantial functional redundancy make it challenging to systematically dissect GPCR functions in vivo. Here, we employ a CRISPR/Cas9-based approach, disrupting 1654 GPCR-encoding genes in 284 strains and mutating 152 neuropeptide-encoding genes in 38 strains in C. elegans. These two mutant libraries enable effective deorphanization of chemoreceptors, and characterization of receptors for neuropeptides in various cellular processes. Mutating a set of closely related GPCRs in a single strain permits the assignment of functions to GPCRs with functional redundancy. Our analyses identify a neuropeptide that interacts with three receptors in hypoxia-evoked locomotory responses, unveil a collection of regulators in pathogen-induced immune responses, and define receptors for the volatile food-related odorants. These results establish our GPCR and neuropeptide mutant libraries as valuable resources for the C. elegans community to expedite studies of GPCR signaling in multiple contexts.
Keyphrases
- genome wide
- crispr cas
- escherichia coli
- bioinformatics analysis
- single cell
- healthcare
- mental health
- genome editing
- dna methylation
- oxidative stress
- wild type
- toll like receptor
- binding protein
- climate change
- dendritic cells
- diabetic rats
- genome wide analysis
- reactive oxygen species
- gas chromatography
- case control
- stress induced