Tear nanoDSF Denaturation Profile Is Predictive of Glaucoma.
Viktoriia E BaksheevaVeronika V TiulinaElena N IomdinaSergey Yu PetrovOlga M FilippovaNina Yu KushnarevichElena A SuleimanRémi EyraudFrançois DevredMarina V SerebryakovaNatalia G ShebardinaDmitry V ChistyakovIvan I SeninVladimir A MitkevichPhilipp O TsvetkovEvgeni Yu ZerniiPublished in: International journal of molecular sciences (2023)
Primary open-angle glaucoma (POAG) is a frequent blindness-causing neurodegenerative disorder characterized by optic nerve and retinal ganglion cell damage most commonly due to a chronic increase in intraocular pressure. The preservation of visual function in patients critically depends on the timeliness of detection and treatment of the disease, which is challenging due to its asymptomatic course at early stages and lack of objective diagnostic approaches. Recent studies revealed that the pathophysiology of glaucoma includes complex metabolomic and proteomic alterations in the eye liquids, including tear fluid (TF). Although TF can be collected by a non-invasive procedure and may serve as a source of the appropriate biomarkers, its multi-omics analysis is technically sophisticated and unsuitable for clinical practice. In this study, we tested a novel concept of glaucoma diagnostics based on the rapid high-performance analysis of the TF proteome by differential scanning fluorimetry (nanoDSF). An examination of the thermal denaturation of TF proteins in a cohort of 311 ophthalmic patients revealed typical profiles, with two peaks exhibiting characteristic shifts in POAG. Clustering of the profiles according to peaks maxima allowed us to identify glaucoma in 70% of cases, while the employment of artificial intelligence (machine learning) algorithms reduced the amount of false-positive diagnoses to 13.5%. The POAG-associated alterations in the core TF proteins included an increase in the concentration of serum albumin, accompanied by a decrease in lysozyme C, lipocalin-1, and lactotransferrin contents. Unexpectedly, these changes were not the only factor affecting the observed denaturation profile shifts, which considerably depended on the presence of low-molecular-weight ligands of tear proteins, such as fatty acids and iron. Overall, we recognized the TF denaturation profile as a novel biomarker of glaucoma, which integrates proteomic, lipidomic, and metallomic alterations in tears, and monitoring of which could be adapted for rapid non-invasive screening of the disease in a clinical setting.
Keyphrases
- optic nerve
- machine learning
- artificial intelligence
- single cell
- optical coherence tomography
- big data
- loop mediated isothermal amplification
- deep learning
- clinical practice
- end stage renal disease
- label free
- rna seq
- ejection fraction
- newly diagnosed
- prognostic factors
- fatty acid
- stem cells
- cell therapy
- minimally invasive
- chronic kidney disease
- patient reported outcomes
- smoking cessation
- real time pcr
- high resolution
- sensitive detection
- drug induced
- case control