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Sciscionella sediminilitoris sp. nov., a Marine Actinomycete Isolated from Cape Rochado, Malaysia, and the Emendations to the Description of the Genus Sciscionella.

Wee Fei Aaron TeoKavimalar DevarajMuhammad Nuruddin Mohd NorWen-Jun LiGeok Yuan Annie Tan
Published in: Current microbiology (2024)
In this study, we employed a polyphasic approach to determine the taxonomic position of a newly isolated actinomycete, designated SE31 T , obtained from a sediment sample collected at Cape Rochado, Malaysia. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain SE31 T belonged to the family Pseudonocardiaceae and exhibited the highest sequence similarity (98.9%) to Sciscionella marina. Further genomic analysis demonstrated a 93.4% average nucleotide identity and 54.4% digital DNA-DNA hybridization relatedness between strain SE31 T and S. marina. The chemotaxonomic characteristics of strain SE31 T were typical of the genus Sciscionella, including cell-wall chemotype IV (with meso-diaminopimelic acid as the diagnostic diamino acid, and arabinose and galactose as whole-cell sugars). The identified polar lipids of strain SE31 T were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylmethylethanolamine, and hydroxyphosphatidymethylethanolamine. The primary menaquinone observed was MK-9(H 4 ), and the major cellular fatty acid was iso-C 16:0 . The genomic DNA size of strain SE31 T was determined to be 7.4 Mbp with a G+C content of 68.7%. Based on these comprehensive findings, strain SE31 T represents a novel species within the genus Sciscionella, in which the name Sciscionella sediminilitoris sp. nov. is proposed. The type strain of Sciscionella sediminilitoris is SE31 T (= DSM 46824 T  = TBRC 5134 T ).
Keyphrases
  • fatty acid
  • circulating tumor
  • cell free
  • copy number
  • nucleic acid
  • genome wide
  • bone marrow
  • risk assessment
  • transcription factor