Organotypic culture of human brain explants as a preclinical model for AI-driven antiviral studies.
Emma PartiotBarbara GordaWilly LutzSolène LebrunPierre KhalfiStéphan MoraBenoit CharlotKarim MajzoubSolange DesagherGowrishankar GaneshSophie ColombRaphaël GaudinPublished in: EMBO molecular medicine (2024)
Viral neuroinfections represent a major health burden for which the development of antivirals is needed. Antiviral compounds that target the consequences of a brain infection (symptomatic treatment) rather than the cause (direct-acting antivirals) constitute a promising mitigation strategy that requires to be investigated in relevant models. However, physiological surrogates mimicking an adult human cortex are lacking, limiting our understanding of the mechanisms associated with viro-induced neurological disorders. Here, we optimized the Organotypic culture of Post-mortem Adult human cortical Brain explants (OPAB) as a preclinical platform for Artificial Intelligence (AI)-driven antiviral studies. OPAB shows robust viability over weeks, well-preserved 3D cytoarchitecture, viral permissiveness, and spontaneous local field potential (LFP). Using LFP as a surrogate for neurohealth, we developed a machine learning framework to predict with high confidence the infection status of OPAB. As a proof-of-concept, we showed that antiviral-treated OPAB could partially restore LFP-based electrical activity of infected OPAB in a donor-dependent manner. Together, we propose OPAB as a physiologically relevant and versatile model to study neuroinfections and beyond, providing a platform for preclinical drug discovery.
Keyphrases
- artificial intelligence
- machine learning
- endothelial cells
- big data
- drug discovery
- deep learning
- resting state
- sars cov
- cell therapy
- white matter
- high glucose
- functional connectivity
- healthcare
- high throughput
- induced pluripotent stem cells
- public health
- pluripotent stem cells
- mental health
- cerebral ischemia
- case control
- stem cells
- multiple sclerosis
- risk factors
- health information
- mass spectrometry
- childhood cancer
- gestational age
- high speed
- single molecule