transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.

Timothy R FallonTereza ČalounováMartin MokrejšJing-Ke WengTomáš Pluskal

Published in: BMC bioinformatics (2023)

transXpress simplifies the use of best-practice methods and up-to-date software for de novo transcriptome assembly, and produces standardized output files that can be mined using SequenceServer to facilitate rapid discovery of new genes and proteins in non-model organisms.

Keyphrases

rna seq
genome wide
single cell
gene expression
small molecule
primary care
healthcare
high throughput
dna methylation
gram negative
quality improvement
multidrug resistant
loop mediated isothermal amplification