Tomáš Pluskal (Tomas Pluskal)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 39

Top Venues

Nature methods

Analytical chemistry

bioRxiv : the preprint server for biology

Cold Spring Harbor protocols

Institute of Organic Chemistry and Biochemistry

Hiroshima University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute of Organic Chemistry and Biochemistry Jun 09 2020

Czechia

Junior Group Leader :: Biochemistry of Plant Specialized Metabolites

Whitehead Institute for Biomedical Research Sep 28 2015 - May 31 2020

United States

Postdoctoral Fellow :: Weng lab

Okinawa Institute of Science and Technology Graduate University Sep 01 2005 - Jul 31 2015

Japan

Technician :: Yanagida lab

Education History

Hiroshima University - Sep 25 2014

Japan

PHD

Publications

Paulo Wender Portal Gomes, Helena M Russo, Robin Schmid, Simone Zuffa, Tito Damiani, Luis-Manuel Quiros-Guerrero, Andrés Mauricio Caraballo-Rodriguez, Haoqi Nina Zhao, Heejung Yang, Shipei Xing, Vincent Charron-Lamoureux, Desnor N Chigumba, Brian E Sedio, Jonathan A Myers, Pierre-Marie Allard, Thomas V Harwood, Giselle Tamayo-Castillo, Kyo-Bin Kang, Emmanuel Defossez, Hector Henrique Ferreira Koolen, Milton Nascimento da Silva, Consuelo Yumiko Yoshioka E Silva, Sergio Rasmann, Tom W N Walker, Gaëtan Glauser, José Miguel Chaves-Fallas, Bruno David, Hyun Woo Kim, Kyu Hyeong Lee, Myeong Ji Kim, Won Jun Choi, Young-Sam Keum, Emilly J S P de Lima, Lívia Soman de Medeiros Medeiros, Giovana A Bataglion, Emmanoel V Costa, Felipe Moura Araújo da Silva, Alice Rhelly V Carvalho, José Diogo E Reis, Sônia Pamplona, Eunah Jeong, Kyungha Lee, Geum Jin Kim, Yun-Seo Kil, Joo-Won Nam, Hyukjae Choi, Yoo Kyong Han, Si Young Park, Ki Yong Lee, Changling Hu, Yilun Dong, Shengmin Sang, Colin R Morrison, Ricardo Moreira Borges, Andrew Magno Teixeira, Seo Yoon Lee, Bum Soo Lee, Se Yun Jeong, Ki Hyun Kim, Adriano Rutz, Arnaud Gaudry, Edouard Bruelhart, Iris F Kappers, Rumyana Karlova, Mara Meisenburg, Roland Berdaguer, J Sebastián Tello, David Henderson, Leslie Cayola, S Joseph Wright, David N Allen, Kristina J Anderson-Teixeira, Jennifer L Baltzer, James A Lutz, Sean M McMahon, Geoffrey G Parker, John D Parker, Trent R Northen, Benjamin P Bowen, Tomáš Pluskal, Justin Johan Jozias van der Hooft, Jeremy J Carver, Nuno Bandeira, Benjamin S Pullman, Jean-Luc Wolfender, Roland D Kersten, Mingxun Wang, Pieter C Dorrestein
plantMASST - Community-driven chemotaxonomic digitization of plants. bioRxiv : the preprint server for biology (2024)
Steffen Heuckeroth, Tito Damiani, Aleksandr Smirnov, Olena Mokshyna, Corinna Brungs, Ansgar Korf, Joshua David Smith, Paolo Stincone, Nicola Dreolin, Louis-Felix Nothias, Tuulia Hyötyläinen, Matej Oresic, Uwe Karst, Pieter C Dorrestein, Daniel Petras, Xiuxia Du, Justin Johan Jozias van der Hooft, Robin Schmid, Tomáš Pluskal
Reproducible mass spectrometry data processing and compound annotation in MZmine 3. Nature protocols (2024)
Paulo Wender Portal Gomes, Helena M Russo, Robin Schmid, Simone Zuffa, Tito Damiani, Luis-Manuel Quiros-Guerrero, Andrés Mauricio Caraballo-Rodriguez, Haoqi Nina Zhao, Heejung Yang, Shipei Xing, Vincent Charron-Lamoureux, Desnor N Chigumba, Brian E Sedio, Jonathan A Myers, Pierre-Marie Allard, Thomas V Harwood, Giselle Tamayo-Castillo, Kyo-Bin Kang, Emmanuel Defossez, Hector Henrique Ferreira Koolen, Milton Nascimento da Silva, Consuelo Yumiko Yoshioka E Silva, Sergio Rasmann, Tom W N Walker, Gaëtan Glauser, José Miguel Chaves-Fallas, Bruno David, Hyun Woo Kim, Kyu Hyeong Lee, Myeong Ji Kim, Won Jun Choi, Young-Sam Keum, Emilly J S P de Lima, Lívia Soman de Medeiros Medeiros, Giovana A Bataglion, Emmanoel V Costa, Felipe Moura Araújo da Silva, Alice Rhelly V Carvalho, José Diogo E Reis, Sônia Pamplona, Eunah Jeong, Kyungha Lee, Geum Jin Kim, Yun-Seo Kil, Joo-Won Nam, Hyukjae Choi, Yoo Kyong Han, Si Young Park, Ki Yong Lee, Changling Hu, Yilun Dong, Shengmin Sang, Colin R Morrison, Ricardo Moreira Borges, Andrew Magno Teixeira, Seo Yoon Lee, Bum Soo Lee, Se Yun Jeong, Ki Hyun Kim, Adriano Rutz, Arnaud Gaudry, Edouard Bruelhart, Iris F Kappers, Rumyana Karlova, Mara Meisenburg, Roland Berdaguer, J Sebastián Tello, David Henderson, Leslie Cayola, S Joseph Wright, David N Allen, Kristina J Anderson-Teixeira, Jennifer L Baltzer, James A Lutz, Sean M McMahon, Geoffrey G Parker, John D Parker, Trent R Northen, Benjamin P Bowen, Tomáš Pluskal, Justin Johan Jozias van der Hooft, Jeremy J Carver, Nuno Bandeira, Benjamin S Pullman, Jean-Luc Wolfender, Roland D Kersten, Mingxun Wang, Pieter C Dorrestein
plantMASST - Community-driven chemotaxonomic digitization of plants. bioRxiv : the preprint server for biology (2024)
Paulo Wender Portal Gomes, Helena M Russo, Robin Schmid, Simone Zuffa, Tito Damiani, Luis-Manuel Quiros-Guerrero, Andrés Mauricio Caraballo-Rodriguez, Haoqi Nina Zhao, Heejung Yang, Shipei Xing, Vincent Charron-Lamoureux, Desnor N Chigumba, Brian E Sedio, Jonathan A Myers, Pierre-Marie Allard, Thomas V Harwood, Giselle Tamayo-Castillo, Kyo-Bin Kang, Emmanuel Defossez, Hector Henrique Ferreira Koolen, Milton Nascimento da Silva, Consuelo Yumiko Yoshioka E Silva, Sergio Rasmann, Tom W N Walker, Gaëtan Glauser, José Miguel Chaves-Fallas, Bruno David, Hyun Woo Kim, Kyu Hyeong Lee, Myeong Ji Kim, Won Jun Choi, Young-Sam Keum, Emilly J S P de Lima, Lívia Soman de Medeiros Medeiros, Giovana A Bataglion, Emmanoel V Costa, Felipe Moura Araújo da Silva, Alice Rhelly V Carvalho, José Diogo E Reis, Sônia Pamplona, Eunah Jeong, Kyungha Lee, Geum Jin Kim, Yun-Seo Kil, Joo-Won Nam, Hyukjae Choi, Yoo Kyong Han, Si Young Park, Ki Yong Lee, Changling Hu, Yilun Dong, Shengmin Sang, Colin R Morrison, Ricardo Moreira Borges, Andrew Magno Teixeira, Seo Yoon Lee, Bum Soo Lee, Se Yun Jeong, Ki Hyun Kim, Adriano Rutz, Arnaud Gaudry, Edouard Bruelhart, Iris F Kappers, Rumyana Karlova, Mara Meisenburg, Roland Berdaguer, J Sebastián Tello, David Henderson, Leslie Cayola, S Joseph Wright, David N Allen, Kristina J Anderson-Teixeira, Jennifer L Baltzer, James A Lutz, Sean M McMahon, Geoffrey G Parker, John D Parker, Trent R Northen, Benjamin P Bowen, Tomáš Pluskal, Justin Johan Jozias van der Hooft, Jeremy J Carver, Nuno Bandeira, Benjamin S Pullman, Jean-Luc Wolfender, Roland D Kersten, Mingxun Wang, Pieter C Dorrestein
plantMASST - Community-driven chemotaxonomic digitization of plants. bioRxiv : the preprint server for biology (2024)
Abzer K Pakkir Shah, Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Diaz, Judith Boldt, Jarmo-Charles J Kalinski, Eftychia Eva Kontou, James Elofson, Alexandros Polyzois, Carolina González-Marín, Shane Farrell, Marie R Aggerbeck, Thapanee Pruksatrakul, Nathan Chan, Yunshu Wang, Magdalena Pöchhacker, Corinna Brungs, Beatriz Cámara, Andrés Mauricio Caraballo-Rodríguez, Andrés Cumsille, Fernanda de Oliveira, Kai Dührkop, Yasin El Abiead, Christian Geibel, Lana G Graves, Martin Hansen, Steffen Heuckeroth, Simon Knoblauch, Anastasiia Kostenko, Mirte C M Kuijpers, Kevin Mildau, Stilianos Papadopoulos Lambidis, Paulo Wender Portal Gomes, Tilman Schramm, Karoline Steuer-Lodd, Paolo Stincone, Sibgha Tayyab, Giovanni Andrea Vitale, Berenike C Wagner, Shipei Xing, Marquis T Yazzie, Simone Zuffa, Martinus de Kruijff, Christine Beemelmanns, Hannes Link, Christoph Mayer, Justin Johan Jozias van der Hooft, Tito Damiani, Tomáš Pluskal, Pieter Dorrestein, Jan Stanstrup, Robin Schmid, Mingxun Wang, Allegra Aron, Madeleine Ernst, Daniel Petras
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. Nature protocols (2024)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Correction to "Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions". Analytical chemistry 95 (6) (2023)
Petr Kouba, Pavel Kohout, Faraneh Haddadi, Anton Bushuiev, Raman Samusevich, Jiri Sedlar, Jiří Damborský, Tomáš Pluskal, Josef Sivic, Stanislav Mazurenko
Machine Learning-Guided Protein Engineering. ACS catalysis 13 (21) (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Correction to "Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions". Analytical chemistry (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical chemistry 95 (1) (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Correction to "Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions". Analytical chemistry 95 (6) (2023)
Téo Hebra, Helena Smrčková, Büsra Elkatmis, Martin Převorovský, Tomáš Pluskal
POMBOX: A Fission Yeast Cloning Toolkit for Molecular and Synthetic Biology. ACS synthetic biology (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical chemistry 95 (1) (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical chemistry 95 (1) (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical chemistry 95 (1) (2023)
Timothy R Fallon, Tereza Čalounová, Martin Mokrejš, Jing-Ke Weng, Tomáš Pluskal
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. BMC bioinformatics 24 (1) (2023)
Robin Schmid, Steffen Heuckeroth, Ansgar Korf, Aleksandr Smirnov, Owen Myers, Thomas S Dyrlund, Roman Bushuiev, Kevin J Murray, Nils Hoffmann, Miaoshan Lu, Abinesh Sarvepalli, Zheng Zhang, Markus Fleischauer, Kai Dührkop, Mark Wesner, Shawn J Hoogstra, Edward Rudt, Olena Mokshyna, Corinna Brungs, Kirill Ponomarov, Lana Mutabdžija, Tito Damiani, Chris J Pudney, Mark Earll, Patrick O Helmer, Timothy R Fallon, Tobias Schulze, Albert Rivas-Ubach, Aivett Bilbao, Henning Richter, Louis-Felix Nothias, Mingxun Wang, Matej Oresic, Jing-Ke Weng, Sebastian Böcker, Astrid Jeibmann, Heiko Hayen, Uwe Karst, Pieter C Dorrestein, Daniel Petras, Xiuxia Du, Tomáš Pluskal
Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nature biotechnology (2023)
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Koehler, Christoph A Krettler, Arif Kamil Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical chemistry 95 (1) (2023)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea G Albarracín Orio, Carlismari Oliveira Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouëllec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. Nature communications 12 (1) (2021)
Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo-Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin Johan Jozias van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Feature-based molecular networking in the GNPS analysis environment. Nature methods 17 (9) (2020)
Colin Y Kim, Andrew J Mitchell, Christopher M Glinkerman, Fu-Shuang Li, Tomáš Pluskal, Jing-Ke Weng
The chloroalkaloid (-)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants. Nature communications 11 (1) (2020)
Tomáš Pluskal, Michael P Torrens-Spence, Timothy R Fallon, Andrea De Abreu, Cindy H Shi, Jing-Ke Weng
The biosynthetic origin of psychoactive kavalactones in kava. Nature plants 5 (8) (2019)
Gert Wohlgemuth, Sajjan S Mehta, Ramon F Mejia, Steffen Neumann, Diego Pedrosa, Tomáš Pluskal, Emma L Schymanski, Egon L Wilighagen, Michael Wilson, David S Wishart, Masanori Arita, Pieter C Dorrestein, Nuno Bandeira, Mingxun Wang, Tobias Schulze, Reza M Salek, Christoph Steinbeck, Venkata Chandrasekhar Nainala, Robert Mistrik, Takaaki Nishioka, Oliver Fiehn
SPLASH, a hashed identifier for mass spectra. Nature biotechnology 34 (11) (2019)
Kenichi Sajiki, Yuria Tahara, Lisa Uehara, Toshio Sasaki, Tomáš Pluskal, Mitsuhiro Yanagida
Genetic regulation of mitotic competence in G0 quiescent cells. Science advances 4 (8) (2018)
Michael Patrick Torrens-Spence, Jack Chun-Ting Liu, Tomáš Pluskal, Yin Kwan Chung, Jing-Ke Weng
Monoamine Biosynthesis via a Noncanonical Calcium-Activatable Aromatic Amino Acid Decarboxylase in Psilocybin Mushroom. ACS chemical biology 13 (12) (2018)
Roland D Kersten, Shoukou Lee, Daishi Fujita, Tomáš Pluskal, Susan Kram, Jennifer E Smith, Takahiro Iwai, Joseph P Noel, Makoto Fujita, Jing-Ke Weng
A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis. Journal of the American Chemical Society 139 (46) (2017)
Egon L Wilighagen, John W Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomáš Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain Torrance, Chris T A Evelo, Rajarashi Guha, Christoph Steinbeck
Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. Journal of cheminformatics 9 (1) (2017)
Egon L Wilighagen, John W Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomáš Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain Torrance, Chris T A Evelo, Rajarashi Guha, Christoph Steinbeck
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. Journal of cheminformatics 9 (1) (2017)
Tomáš Pluskal, Kenichi Sajiki, Joanne Becker, Kojiro Takeda, Mitsuhiro Yanagida
Diverse fission yeast genes required for responding to oxidative and metal stress: Comparative analysis of glutathione-related and other defense gene deletions. Genes to cells : devoted to molecular & cellular mechanisms 21 (6) (2016)
Tomáš Pluskal, Mitsuhiro Yanagida
Metabolomic Analysis of Schizosaccharomyces pombe: Sample Preparation, Detection, and Data Interpretation. Cold Spring Harbor protocols 2016 (12) (2016)
Tomáš Pluskal, Mitsuhiro Yanagida
Measurement of Metabolome Samples Using Liquid Chromatography-Mass Spectrometry, Data Acquisition, and Processing. Cold Spring Harbor protocols 2016 (12) (2016)
Tomáš Pluskal, Takahiro Nakamura, Mitsuhiro Yanagida
Preparation of Intracellular Metabolite Extracts from Liquid Schizosaccharomyces pombe Cultures. Cold Spring Harbor protocols 2016 (12) (2016)

Tomáš Pluskal.css-eqlu8i{font-size:small;padding-left:4px;} (Tomas Pluskal)

Publication Activity (10 Years)

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Tomáš Pluskal (Tomas Pluskal)