Six-Gene Signature for Differential Diagnosis and Therapeutic Decisions in Non-Small-Cell Lung Cancer-A Validation Study.
Radoslaw CharkiewiczAnetta SulewskaPiotr KarabowiczGrzegorz LapucAlicja CharkiewiczMarcin KraskaJoanna PancewiczMalgorzata LukasikMiroslaw KozlowskiRafal StecDominika ZiembickaWeronika PiszczWojciech MiltykWieslawa NiklinskaPublished in: International journal of molecular sciences (2024)
Non-small-cell lung cancer (NSCLC) poses a challenge due to its heterogeneity, necessitating precise histopathological subtyping and prognostication for optimal treatment decision-making. Molecular markers emerge as a potential solution, overcoming the limitations of conventional methods and supporting the diagnostic-therapeutic interventions. In this study, we validated the expression of six genes ( MIR205HG , KRT5 , KRT6A , KRT6C , SERPINB5 , and DSG3 ), previously identified within a 53-gene signature developed by our team, utilizing gene expression microarray technology. Real-time PCR on 140 thoroughly characterized early-stage NSCLC samples revealed substantial upregulation of all six genes in squamous cell carcinoma (SCC) compared to adenocarcinoma (ADC), regardless of clinical factors. The decision boundaries of the logistic regression model demonstrated effective separation of the relative expression levels between SCC and ADC for most genes, excluding KRT6C . Logistic regression and gradient boosting decision tree classifiers, incorporating all six validated genes, exhibited notable performance (AUC: 0.8930 and 0.8909, respectively) in distinguishing NSCLC subtypes. Nevertheless, our investigation revealed that the gene expression profiles failed to yield predictive value regarding the progression of early-stage NSCLC. Our molecular diagnostic models manifest the potential for an exhaustive molecular characterization of NSCLC, subsequently informing personalized treatment decisions and elevating the standards of clinical management and prognosis for patients.
Keyphrases
- genome wide identification
- genome wide
- small cell lung cancer
- early stage
- advanced non small cell lung cancer
- squamous cell carcinoma
- poor prognosis
- gene expression
- decision making
- genome wide analysis
- dna methylation
- bioinformatics analysis
- copy number
- transcription factor
- end stage renal disease
- single cell
- cell proliferation
- brain metastases
- long non coding rna
- chronic kidney disease
- real time pcr
- newly diagnosed
- ejection fraction
- physical activity
- magnetic resonance
- single molecule
- epidermal growth factor receptor
- peritoneal dialysis
- lymph node metastasis
- prognostic factors
- climate change
- signaling pathway
- diffusion weighted
- patient reported outcomes
- rectal cancer
- long noncoding rna
- living cells