Identifying Toxicity Mechanisms Associated with Early Lanthanide Exposure through Multidimensional Genome-Wide Screening.
Roger M PallaresDahlia D AnSolène HébertAlex LoguinovMichael ProctorJonathan A VillalobosKathleen A BjornstadChris J RosenChristopher D VulpeRebecca J AbergelPublished in: ACS omega (2022)
Lanthanides are a series of elements essential to a wide range of applications, from clean energy production to healthcare. Despite their presence in multiple products and technologies, their toxicological characteristics have been only partly studied. Recently, our group has employed a genomic approach to extensively characterize the toxicity mechanisms of lanthanides. Even though we identified substantially different behaviors for mid and late lanthanides, the toxicological profiles of early lanthanides remained elusive. Here, we overcome this gap by describing a multidimensional genome-wide toxicogenomic study for two early lanthanides, namely, lanthanum and praseodymium. We used Saccharomyces cerevisiae as a model system since its genome shares many biological pathways with humans. By performing functional analysis and protein-protein interaction network analysis, we identified the main genes and proteins that participate in the yeast response to counter metal harmful effects. Moreover, our analysis also highlighted key enzymes that are dysregulated by early lanthanides, inducing cytotoxicity. Several of these genes and proteins have human orthologues, indicating that they may also participate in the human response against the metals. By highlighting the key genes and proteins in lanthanide-induced toxicity, this work may contribute to the development of new prophylactic and therapeutic strategies against lanthanide harmful exposures.
Keyphrases
- genome wide
- dna methylation
- saccharomyces cerevisiae
- healthcare
- endothelial cells
- copy number
- network analysis
- protein protein
- single molecule
- oxidative stress
- small molecule
- gene expression
- climate change
- pluripotent stem cells
- oxide nanoparticles
- metal organic framework
- induced pluripotent stem cells
- genome wide identification
- air pollution
- transcription factor
- cell wall
- psychometric properties