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A simple ATAC-seq protocol for population epigenetics.

Ronaldo de Carvalho AugustoAki MinodaChristoph Grunau
Published in: Wellcome open research (2020)
We describe here a protocol for the generation of sequence-ready libraries for population epigenomics studies. The protocol is a streamlined version of the Assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) that provides a positive display of accessible, presumably euchromatic regions. The protocol is straightforward and can be used with small individuals such as daphnia and schistosome worms, and probably many other biological samples of comparable size, and it requires little molecular biology handling expertise.
Keyphrases
  • randomized controlled trial
  • genome wide
  • high throughput sequencing
  • rna seq
  • single cell
  • dna damage
  • transcription factor
  • high throughput
  • dna methylation