An Immune-Related Gene Prognostic Index for Triple-Negative Breast Cancer Integrates Multiple Aspects of Tumor-Immune Microenvironment.
Xiaowei WangWenjia SuDabei TangJing JingJing XiongYuwei DengHuili LiuWenjie MaZhaoliang LiuQingyuan ZhangPublished in: Cancers (2021)
Tumor-immune cell compositions and immune checkpoints comprehensively affect TNBC outcomes. With the significantly improved survival rate of TNBC patients treated with ICI therapies, a biomarker integrating multiple aspects of TIME may have prognostic value for improving the efficacy of ICI therapy. Immune-related hub genes were identified with weighted gene co-expression network analysis and differential gene expression assay using The Cancer Genome Atlas TNBC data set (n = 115). IRGPI was constructed with Cox regression analysis. Immune cell compositions and TIL status were analyzed with CIBERSORT and TIDE. The discovery was validated with the Molecular Taxonomy of Breast Cancer International Consortium data set (n = 196) and a patient cohort from our hospital. Tumor expression or serum concentrations of CCL5, CCL25, or PD-L1 were determined with immunohistochemistry or ELISA. The constructed IRGPI was composed of CCL5 and CCL25 genes and was negatively associated with the patient's survival. IRGPI also predicts the compositions of M0 and M2 macrophages, memory B cells, CD8+ T cells, activated memory CD4 T cells, and the exclusion and dysfunction of TILs, as well as PD-1 and PD-L1 expression of TNBC. IRGPI is a promising biomarker for predicting the prognosis and multiple immune characteristics of TNBC.
Keyphrases
- network analysis
- genome wide
- gene expression
- poor prognosis
- genome wide identification
- liver injury
- liver fibrosis
- high throughput
- case report
- drug induced
- healthcare
- big data
- magnetic resonance
- stem cells
- working memory
- long non coding rna
- oxidative stress
- papillary thyroid
- type diabetes
- emergency department
- binding protein
- metabolic syndrome
- transcription factor
- adverse drug
- young adults
- squamous cell
- smoking cessation
- weight loss