Discovery and Biosynthesis of Cihunamides, Macrocyclic Antibacterial RiPPs with a Unique C-N Linkage Formed by CYP450 Catalysis.
Joon Soo AnHyunbin LeeHyungyu KimSeungyeon WooHyunsung NamJayho LeeJi Yun LeeSang-Jip NamSang-Kook LeeKi-Bong OhSeokhee KimDong-Chan OhPublished in: Angewandte Chemie (International ed. in English) (2023)
Cihunamides A-D (1-4), novel antibacterial RiPPs, were isolated from volcanic-island-derived Streptomyces sp. The structures of 1-4 were elucidated by 1 H, 13 C, and 15 N NMR, MS, and chemical derivatization; they contain a tetrapeptide core composed of WNIW, cyclized by a unique C-N linkage between two Trp units. Genome mining of the producer strain revealed two biosynthetic genes encoding a cytochrome P450 enzyme and a precursor peptide. Heterologous co-expression of the core genes demonstrated the biosynthesis of cihunamides through P450-mediated oxidative Trp-Trp cross-linking. Further bioinformatic analysis uncovered 252 homologous gene clusters, including that of tryptorubins, which possess a distinct Trp-Trp linkage. Cihunamides do not display the non-canonical atropisomerism shown in tryptorubins, which are the founding members of the "atropitide" family. Therefore, we propose to use a new RiPP family name, "bitryptides", for cihunamides, tryptorubins, and their congeners, wherein the Trp-Trp linkages define the structural class rather than non-canonical atropisomerism.
Keyphrases
- genome wide
- dna methylation
- ms ms
- high resolution
- hiv testing
- small molecule
- genome wide identification
- poor prognosis
- high throughput
- copy number
- hepatitis c virus
- binding protein
- mass spectrometry
- long non coding rna
- liquid chromatography tandem mass spectrometry
- bioinformatics analysis
- gas chromatography mass spectrometry
- men who have sex with men
- saccharomyces cerevisiae
- high density
- cell wall