RosetteArray ® Platform for Quantitative High-Throughput Screening of Human Neurodevelopmental Risk.
Brady F LundinGavin T KnightNikolai J FedorchakKevin KruckiNisha R IyerJack E MaherNicholas R IzbanAbilene RobertsMadeline R CiceroJoshua F RobinsonBermans J IskandarRebecca WillettRandolph Scott AshtonPublished in: bioRxiv : the preprint server for biology (2024)
Neural organoids have revolutionized how human neurodevelopmental disorders (NDDs) are studied. Yet, their utility for screening complex NDD etiologies and in drug discovery is limited by a lack of scalable and quantifiable derivation formats. Here, we describe the RosetteArray ® platform's ability to be used as an off-the-shelf, 96-well plate assay that standardizes incipient forebrain and spinal cord organoid morphogenesis as micropatterned, 3-D, singularly polarized neural rosette tissues (>9000 per plate). RosetteArrays are seeded from cryopreserved human pluripotent stem cells, cultured over 6-8 days, and immunostained images can be quantified using artificial intelligence-based software. We demonstrate the platform's suitability for screening developmental neurotoxicity and genetic and environmental factors known to cause neural tube defect risk. Given the presence of rosette morphogenesis perturbation in neural organoid models of NDDs and neurodegenerative disorders, the RosetteArray platform could enable quantitative high-throughput screening (qHTS) of human neurodevelopmental risk across regulatory and precision medicine applications.
Keyphrases
- pluripotent stem cells
- endothelial cells
- artificial intelligence
- induced pluripotent stem cells
- high throughput
- spinal cord
- deep learning
- machine learning
- drug discovery
- gene expression
- genome wide
- dna methylation
- transcription factor
- mass spectrometry
- mesenchymal stem cells
- bone marrow
- data analysis
- neuropathic pain
- single cell
- cord blood
- solid state