A fast, resource efficient, and reliable rule-based system for COVID-19 symptom identification.
Himanshu S SahooGreg M SilvermanNicholas E IngrahamMonica I LupeiMichael A PuskarichRaymond L FinzelJohn SartoriRui ZhangBenjamin C KnollSijia LiuHongfang LiuGenevieve B MeltonChristopher J TignanelliSerguei V S PakhomovPublished in: JAMIA open (2021)
This rule-based gazetteer overcame key technical limitations facilitating real-time symptomatology identification for COVID-19 and integration of unstructured data elements into our CDS. It is ideal for large-scale deployment across a wide variety of healthcare settings for surveillance of acute COVID-19 symptoms for integration into prognostic modeling. Such a system is currently being leveraged for monitoring of postacute sequelae of COVID-19 (PASC) progression in COVID-19 survivors. This study conducted the first in-depth analysis and developed a rule-based gazetteer for COVID-19 symptom extraction with the following key features: low processor and memory utilization, faster runtime, and similar weighted microaverage and macroaverage measures for precision, recall, and f1-score compared to industry-standard annotation systems.