Rui Zhang

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 52

Top Topics

Low Density Lipoprotein

Cardiovascular Disease

Convolutional Neural Network

Electronic Health Record

Top Venues

Journal of the American Medical Informatics Association : JAMIA

medRxiv : the preprint server for health sciences

Clinical pharmacology and therapeutics

NPJ digital medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal of the American Medical Informatics Association : JAMIA 31 (7) (2024)
Xinsong Du, Yifei Wang, Zhengyang Zhou, Ya-Wen Chuang, Richard Yang, Wenyu Zhang, Xinyi Wang, Rui Zhang, Pengyu Hong, David W Bates, Li Zhou
Generative Large Language Models in Electronic Health Records for Patient Care Since 2023: A Systematic Review. medRxiv : the preprint server for health sciences (2024)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Le Peng, Gaoxiang Luo, Sicheng Zhou, Jiandong Chen, Ziyue Xu, Ju Sun, Rui Zhang
An in-depth evaluation of federated learning on biomedical natural language processing for information extraction. NPJ digital medicine 7 (1) (2024)
Xing He, Ruoqi Wei, Yu Huang, Zhaoyi Chen, Tianchen Lyu, Sarah Bost, Jiayi Tong, Lu Li, Yujia Zhou, Jingchuan Guo, Huilin Tang, Fei Wang, Steven DeKosky, Hua Xu, Yong Chen, Rui Zhang, Jie Xu, Yi Guo, Yonghui Wu, Jiang Bian
Develop and Validate a Computable Phenotype for the Identification of Alzheimer's Disease Patients Using Electronic Health Record Data. medRxiv : the preprint server for health sciences (2024)
Mingchen Li, Huixue Zhou, Han Yang, Rui Zhang
RT: a Retrieving and Chain-of-Thought framework for few-shot medical named entity recognition. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matthew Scott Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and Validation of the Pharmacological Statin-Associated Muscle Symptoms Risk Stratification Score Using Electronic Health Record Data. Clinical pharmacology and therapeutics (2024)
Han Yang, Sicheng Zhou, Zexi Rao, Chen Zhao, Erjia Cui, Chetan Shenoy, Anne H Blaes, Nishitha Paidimukkala, Jinhua Wang, Jue Hou, Rui Zhang
Multi-modality risk prediction of cardiovascular diseases for breast cancer cohort in the All of Us Research Program. Journal of the American Medical Informatics Association : JAMIA (2024)
Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal of the American Medical Informatics Association : JAMIA 31 (7) (2024)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matthew Scott Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and Validation of the Pharmacological Statin-Associated Muscle Symptoms Risk Stratification Score Using Electronic Health Record Data. Clinical pharmacology and therapeutics 115 (4) (2024)
Le Peng, Gaoxiang Luo, Sicheng Zhou, Jiandong Chen, Ziyue Xu, Ju Sun, Rui Zhang
An in-depth evaluation of federated learning on biomedical natural language processing for information extraction. NPJ digital medicine 7 (1) (2024)
Le Peng, Gaoxiang Luo, Sicheng Zhou, Jiandong Chen, Ziyue Xu, Ju Sun, Rui Zhang
An in-depth evaluation of federated learning on biomedical natural language processing for information extraction. NPJ digital medicine 7 (1) (2024)
Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal of the American Medical Informatics Association : JAMIA 31 (7) (2024)
Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal of the American Medical Informatics Association : JAMIA (2024)
Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. Journal of the American Medical Informatics Association : JAMIA 31 (7) (2024)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Xiaoqian Jiang, Liwei Wang, Huan He, Sunyang Fu, Sijia Liu, David A Hanauer, Daniel R Harris, Ramakanth Kavuluru, Rui Zhang, Karthik Natarajan, Nishanth P Pavinkurve, Janos G Hajagos, Sritha Rajupet, Veena Lingam, Mary Saltz, Corey Elowsky, Richard A Moffitt, Farrukh M Koraishy, Matvey B Palchuk, Jordan Donovan, Lora Lingrey, Garo Stone-DerHagopian, Robert T Miller, Andrew E Williams, Peter J Leese, Paul I Kovach, Emily Rose Pfaff, Mikhail Zemmel, Robert D Pates, Nick Guthe, Melissa A Haendel, Christopher G Chute, Hongfang Liu, null null, null null
A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation. JMIR medical informatics 12 (2024)
Mingchen Li, Huixue Zhou, Han Yang, Rui Zhang
RT: a Retrieving and Chain-of-Thought framework for few-shot medical named entity recognition. Journal of the American Medical Informatics Association : JAMIA (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matthew Scott Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and Validation of the Pharmacological Statin-Associated Muscle Symptoms Risk Stratification Score Using Electronic Health Record Data. Clinical pharmacology and therapeutics 115 (4) (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matthew Scott Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and Validation of the Pharmacological Statin-Associated Muscle Symptoms Risk Stratification Score Using Electronic Health Record Data. Clinical pharmacology and therapeutics (2024)
Ying Liu, Haozhu Wang, Huixue Zhou, Mingchen Li, Yu Hou, Sicheng Zhou, Fang Wang, Rama Hoetzlein, Rui Zhang
A review of reinforcement learning for natural language processing and applications in healthcare. Journal of the American Medical Informatics Association : JAMIA (2024)
Mingchen Li, Huixue Zhou, Han Yang, Rui Zhang
RT: a Retrieving and Chain-of-Thought framework for few-shot medical named entity recognition. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction. Journal of the American Medical Informatics Association : JAMIA (2024)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction. Journal of the American Medical Informatics Association : JAMIA (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matthew Scott Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and Validation of the Pharmacological Statin-Associated Muscle Symptoms Risk Stratification Score Using Electronic Health Record Data. Clinical pharmacology and therapeutics 115 (4) (2024)
Mingchen Li, Huixue Zhou, Han Yang, Rui Zhang
RT: a Retrieving and Chain-of-Thought framework for few-shot medical named entity recognition. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Xing He, Ruoqi Wei, Yu Huang, Zhaoyi Chen, Tianchen Lyu, Sarah Bost, Jiayi Tong, Lu Li, Yujia Zhou, Jingchuan Guo, Huilin Tang, Fei Wang, Steven DeKosky, Hua Xu, Yong Chen, Rui Zhang, Jie Xu, Yi Guo, Yonghui Wu, Jiang Bian
Develop and Validate a Computable Phenotype for the Identification of Alzheimer's Disease Patients Using Electronic Health Record Data. medRxiv : the preprint server for health sciences (2024)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matt Loth, Rui Zhang, Robert J Straka
Development and Application of Pharmacological Statin-Associated Muscle Symptoms Phenotyping Algorithms Using Structured and Unstructured Electronic Health Records Data. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Han Yang, Mingchen Li, Huixue Zhou, Yongkang Xiao, Qian Fang, Rui Zhang
One LLM is not Enough: Harnessing the Power of Ensemble Learning for Medical Question Answering. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Robin R Austin, Sheng-Chieh Lu, Greg Marc Silverman, Yuqi Zhou, Halil Kilicoglu, Hua Xu, Rui Zhang
Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition. Journal of the American Medical Informatics Association : JAMIA (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Han Yang, Mingchen Li, Huixue Zhou, Yongkang Xiao, Qian Fang, Rui Zhang
One LLM is not Enough: Harnessing the Power of Ensemble Learning for Medical Question Answering. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matt Loth, Rui Zhang, Robert J Straka
Development and application of pharmacological statin-associated muscle symptoms phenotyping algorithms using structured and unstructured electronic health records data. JAMIA open 6 (4) (2023)
Boguang Sun, Pui Ying Yew, Chih-Lin Chi, Meijia Song, Matt Loth, Yue Liang, Rui Zhang, Robert J Straka
Development and validation of the pharmacological statin-associated muscle symptoms risk stratification (PSAMS-RS) score using real-world electronic health record data. medRxiv : the preprint server for health sciences (2023)
Yu Hou, Jeremy Yeung, Hua Xu, Chang Su, Fei Wang, Rui Zhang
From Answers to Insights: Unveiling the Strengths and Limitations of ChatGPT and Biomedical Knowledge Graphs. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Han Yang, Mingchen Li, Huixue Zhou, Yongkang Xiao, Qian Fang, Rui Zhang
One LLM is not Enough: Harnessing the Power of Ensemble Learning for Medical Question Answering. medRxiv : the preprint server for health sciences (2023)
Han Yang, Mingchen Li, Huixue Zhou, Yongkang Xiao, Qian Fang, Rui Zhang
One LLM is not Enough: Harnessing the Power of Ensemble Learning for Medical Question Answering. medRxiv : the preprint server for health sciences (2023)
Yongkang Xiao, Yu Hou, Huixue Zhou, Gayo Diallo, Marcelo Fiszman, Julian Wolfson, Halil Kilicoglu, You Chen, Chang Su, Hua Xu, William G Mantyh, Rui Zhang
Repurposing Non-pharmacological Interventions for Alzheimer's Diseases through Link Prediction on Biomedical Literature. medRxiv : the preprint server for health sciences (2023)
Huixue Zhou, Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang
LLM Instruction-Example Adaptive Prompting (LEAP) Framework for Clinical Relation Extraction. medRxiv : the preprint server for health sciences (2023)
Esha Singh, Anu Bompelli, Ruyuan Wan, Jiang Bian, Serguei Pakhomov, Rui Zhang
A conversational agent system for dietary supplements use. BMC medical informatics and decision making 22 (Suppl 1) (2022)
Sicheng Zhou, Nan Wang, Liwei Wang, Hongfang Liu, Rui Zhang
CancerBERT: a cancer domain-specific language model for extracting breast cancer phenotypes from electronic health records. Journal of the American Medical Informatics Association : JAMIA 29 (7) (2022)
Zitao Shen, Dalton Schutte, Yoonkwon Yi, Anusha Bompelli, Fang Yu, Yanshan Wang, Rui Zhang
Classifying the lifestyle status for Alzheimer's disease from clinical notes using deep learning with weak supervision. BMC medical informatics and decision making 22 (Suppl 1) (2022)
Anusha Bompelli, Yanshan Wang, Ruyuan Wan, Esha Singh, Yuqi Zhou, Lin Xu, David Oniani, Bhavani Singh Agnikula Kshatriya, Joyce Joy E Balls-Berry, Rui Zhang
Social and Behavioral Determinants of Health in the Era of Artificial Intelligence with Electronic Health Records: A Scoping Review. Health data science 2021 (2021)
Anusha Bompelli, Yanshan Wang, Ruyuan Wan, Esha Singh, Yuqi Zhou, Lin Xu, David Oniani, Bhavani Singh Agnikula Kshatriya, Joyce Joy E Balls-Berry, Rui Zhang
Social and Behavioral Determinants of Health in the Era of Artificial Intelligence with Electronic Health Records: A Scoping Review. Health data science 2021 (2021)
Himanshu S Sahoo, Greg M Silverman, Nicholas E Ingraham, Monica I Lupei, Michael A Puskarich, Raymond L Finzel, John Sartori, Rui Zhang, Benjamin C Knoll, Sijia Liu, Hongfang Liu, Genevieve B Melton, Christopher J Tignanelli, Serguei V S Pakhomov
A fast, resource efficient, and reliable rule-based system for COVID-19 symptom identification. JAMIA open 4 (3) (2021)
Sicheng Zhou, Yunpeng Zhao, Jiang Bian, Ann F Haynos, Rui Zhang
Exploring Eating Disorder Topics on Twitter: Machine Learning Approach. JMIR medical informatics 8 (10) (2020)
Rui Zhang, Jingjing Meng, Qinshu Lian, Xi Chen, Brent Bauman, Haitao Chu, Bradley Segura, Sabita Roy
Prescription opioids are associated with higher mortality in patients diagnosed with sepsis: A retrospective cohort study using electronic health records. PloS one 13 (1) (2018)