The Mantle Transcriptome of Chamelea gallina (Mollusca: Bivalvia) and Shell Biomineralization.
Federica CarducciMaria Assunta BiscottiAlessandro MoscaSamuele GrecoMarco GerdolFrancesco MemmolaMarco BaruccaAdriana CanapaPublished in: Animals : an open access journal from MDPI (2022)
The striped venus Chamelea gallina is a bivalve mollusc that represents one of the most important fishery resources of the Adriatic Sea. In this work, we investigated for the first time the ability of this species to modulate the expression of genes encoding proteins involved in biomineralization process in response to biotic and abiotic factors. We provided the first comprehensive transcriptome from the mantle tissue of clams collected in two sampling sites located along the Italian Adriatic coast and characterized by different environmental features. Moreover, the assessment of environmental parameters, scanning electron microscopy (SEM), and X-ray diffraction (XRD) measurements on valves were conducted to better contextualize RNA sequencing (RNA-Seq) data. Functional annotation of differentially expressed genes (DEGs) and SEM observations highlighted a different shell mineralization behaviour in C. gallina clams collected from two selected sites characterized by diverse environmental parameters.
Keyphrases
- rna seq
- electron microscopy
- single cell
- genome wide
- human health
- genome wide identification
- life cycle
- poor prognosis
- high resolution
- bioinformatics analysis
- electronic health record
- aortic valve
- dna methylation
- risk assessment
- big data
- magnetic resonance
- coronary artery disease
- heart failure
- transcription factor
- long non coding rna
- transcatheter aortic valve implantation
- genetic diversity
- aortic stenosis
- arabidopsis thaliana