Effective design and inference for cell sorting and sequencing based massively parallel reporter assays.

Pierre-Aurélien GilliotThomas E Gorochowski

Published in: Bioinformatics (Oxford, England) (2023)

The FORECAST package is available at: https://gitlab.com/Pierre-Aurelien/forecast. Code for the deep learning analysis performed in this study is available at: https://gitlab.com/Pierre-Aurelien/rebeca.

Keyphrases

single cell
deep learning
high throughput
crispr cas
cell therapy
artificial intelligence
stem cells
mesenchymal stem cells
bone marrow