Thomas E Gorochowski

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 49

Top Venues

Nature communications

Journal of integrative bioinformatics

Journal of micro-bio robotics

Journal of the Royal Society, Interface

University of Bristol

University of Bristol (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Bristol

United Kingdom

Research Fellow :: School of Biological Sciences

Massachusetts Institute of Technology

United States

Postdoctoral Associate :: Biological Engineering

DSM Delft Apr 01 2012 - Mar 31 2014

Netherlands

Marie Curie Fellow and Associate Scientist :: Genetics

Education History

University of Bristol Jan 01 2009 - Mar 01 2012

United Kingdom

PHD :: Engineering Mathematics

Publications

Simeon D Castle, Michiel Stock, Thomas E Gorochowski
Engineering is evolution: a perspective on design processes to engineer biology. Nature communications 15 (1) (2024)
Simeon D Castle, Michiel Stock, Thomas E Gorochowski
Engineering is evolution: a perspective on design processes to engineer biology. Nature communications 15 (1) (2024)
Pierre-Aurélien Gilliot, Thomas E Gorochowski
Transfer learning for cross-context prediction of protein expression from 5'UTR sequence. Nucleic acids research (2024)
Shivang Hina-Nilesh Joshi, Christopher Jenkins, David Ulaeto, Thomas E Gorochowski
Accelerating Genetic Sensor Development, Scale-up, and Deployment Using Synthetic Biology. Biodesign research 6 (2024)
Simeon D Castle, Michiel Stock, Thomas E Gorochowski
Engineering is evolution: a perspective on design processes to engineer biology. Nature communications 15 (1) (2024)
Pierre-Aurélien Gilliot, Thomas E Gorochowski
Transfer learning for cross-context prediction of protein expression from 5'UTR sequence. Nucleic acids research 52 (13) (2024)
Neshika Wijewardhane, Ana Rubio Denniss, Matthew Uppington, Helmut Hauser, Thomas E Gorochowski, Eugenia Piddini, Sabine Hauert
Long-term imaging and spatio-temporal control of living cells using targeted light based on closed-loop feedback. Journal of micro-bio robotics 20 (1) (2024)
Michiel Stock, Thomas E Gorochowski
Open-endedness in synthetic biology: A route to continual innovation for biological design. Science advances 10 (3) (2024)
Neshika Wijewardhane, Ana Rubio Denniss, Matthew Uppington, Helmut Hauser, Thomas E Gorochowski, Eugenia Piddini, Sabine Hauert
Long-term imaging and spatio-temporal control of living cells using targeted light based on closed-loop feedback. Journal of micro-bio robotics 20 (1) (2024)
Michiel Stock, Thomas E Gorochowski
Open-endedness in synthetic biology: A route to continual innovation for biological design. Science advances 10 (3) (2024)
Johanna A Blee, Thomas E Gorochowski, Sabine Hauert
Optimization of periodic treatment strategies for bacterial biofilms using an agent-based in silico approach. Journal of the Royal Society, Interface 21 (213) (2024)
Neshika Wijewardhane, Ana Rubio Denniss, Matthew Uppington, Helmut Hauser, Thomas E Gorochowski, Eugenia Piddini, Sabine Hauert
Long-term imaging and spatio-temporal control of living cells using targeted light based on closed-loop feedback. Journal of micro-bio robotics 20 (1) (2024)
Pierre-Aurélien Gilliot, Thomas E Gorochowski
Transfer learning for cross-context prediction of protein expression from 5'UTR sequence. Nucleic acids research 52 (13) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics 21 (1) (2024)
Johanna A Blee, Thomas E Gorochowski, Sabine Hauert
Optimization of periodic treatment strategies for bacterial biofilms using an agent-based in silico approach. Journal of the Royal Society, Interface 21 (213) (2024)
Natalie R Zelenka, Nina Di Cara, Kieren Sharma, Seeralan Sarvaharman, Jasdeep S Ghataora, Fabio Parmeggiani, Jeff Nivala, Zahraa S Abdallah, Lucia Marucci, Thomas E Gorochowski
Data hazards in synthetic biology. Synthetic biology (Oxford, England) 9 (1) (2024)
Johanna A Blee, Thomas E Gorochowski, Sabine Hauert
Optimization of periodic treatment strategies for bacterial biofilms using an agent-based in silico approach. Journal of the Royal Society, Interface 21 (213) (2024)
Neshika Wijewardhane, Ana Rubio Denniss, Matthew Uppington, Helmut Hauser, Thomas E Gorochowski, Eugenia Piddini, Sabine Hauert
Long-term imaging and spatio-temporal control of living cells using targeted light based on closed-loop feedback. Journal of micro-bio robotics 20 (1) (2024)
Natalie R Zelenka, Nina Di Cara, Kieren Sharma, Seeralan Sarvaharman, Jasdeep S Ghataora, Fabio Parmeggiani, Jeff Nivala, Zahraa S Abdallah, Lucia Marucci, Thomas E Gorochowski
Data hazards in synthetic biology. Synthetic biology (Oxford, England) 9 (1) (2024)
Neshika Wijewardhane, Ana Rubio Denniss, Matthew Uppington, Helmut Hauser, Thomas E Gorochowski, Eugenia Piddini, Sabine Hauert
Long-term imaging and spatio-temporal control of living cells using targeted light based on closed-loop feedback. Journal of micro-bio robotics 20 (1) (2024)
Shivang Hina-Nilesh Joshi, Christopher Jenkins, David Ulaeto, Thomas E Gorochowski
Accelerating Genetic Sensor Development, Scale-up, and Deployment Using Synthetic Biology. Biodesign research 6 (2024)
Johanna A Blee, Thomas E Gorochowski, Sabine Hauert
Optimization of periodic treatment strategies for bacterial biofilms using an agent-based in silico approach. Journal of the Royal Society, Interface 21 (213) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics (2024)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics (2023)
Pierre-Aurélien Gilliot, Thomas E Gorochowski
Effective design and inference for cell sorting and sequencing based massively parallel reporter assays. Bioinformatics (Oxford, England) 39 (5) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Casey-Tyler Berezin, Luis U Aguilera, Sonja Billerbeck, Philip E Bourne, Douglas M Densmore, Paul Freemont, Thomas E Gorochowski, Sarah I Hernandez, Nathan J Hillson, Connor R King, Michael Köpke, Shuyi Ma, Katie M Miller, Tae Seok Moon, Jason H Moore, Brian Munsky, Chris J Myers, Dequina A Nicholas, Samuel J Peccoud, Wen Zhou, Jean Peccoud
Ten simple rules for managing laboratory information. PLoS computational biology 19 (12) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Pierre-Aurélien Gilliot, Thomas E Gorochowski
Effective design and inference for cell sorting and sequencing based massively parallel reporter assays. Bioinformatics (Oxford, England) 39 (5) (2023)
Matthew J Tarnowski, Gilda Varliero, Jim Scown, Emily Phelps, Thomas E Gorochowski
Soil as a transdisciplinary research catalyst: from bioprospecting to biorespecting. Royal Society open science 10 (11) (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E Gorochowski, Michael Hucka, Sarah M Keating, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. Journal of integrative bioinformatics 20 (1) (2023)
Matthew J Tarnowski, Thomas E Gorochowski
Massively parallel characterization of engineered transcript isoforms using direct RNA sequencing. Nature communications 13 (1) (2022)
Klara Szydlo, Zoya Ignatova, Thomas E Gorochowski
Improving the Robustness of Engineered Bacteria to Nutrient Stress Using Programmed Proteolysis. ACS synthetic biology 11 (3) (2022)
Marc Besson, Jamie Alison, Kim Bjerge, Thomas E Gorochowski, Toke T Thomas Høye, Tommaso Jucker, Hjalte Mads Rosenstand Mann, Christopher F Clements
Towards the fully automated monitoring of ecological communities. Ecology letters 25 (12) (2022)
Elisa Pedone, Irene de Cesare, Criseida G Zamora-Chimal, David Haener, Lorena Postiglione, Antonella La Regina, Barbara Shannon, Nigel J Savery, Claire S Grierson, Mario di Bernardo, Thomas E Gorochowski, Lucia Marucci
Cheetah: A Computational Toolkit for Cybergenetic Control. ACS synthetic biology 10 (5) (2021)
F Veronica Greco, Amir Pandi, Tobias J Erb, Claire S Grierson, Thomas E Gorochowski
Harnessing the central dogma for stringent multi-level control of gene expression. Nature communications 12 (1) (2021)
Charlie J Clark, James Scott-Brown, Thomas E Gorochowski
paraSBOLv: a foundation for standard-compliant genetic design visualization tools. Synthetic biology (Oxford, England) 6 (1) (2021)
Simeon D Castle, Claire S Grierson, Thomas E Gorochowski
Towards an engineering theory of evolution. Nature communications 12 (1) (2021)
Yongjin Park, Amin Espah Borujeni, Thomas E Gorochowski, Jonghyeon Shin, Christopher A Voigt
Precision design of stable genetic circuits carried in highly-insulated E. coli genomic landing pads. Molecular systems biology 16 (8) (2021)
Vittorio Bartoli, Grace A Meaker, Mario di Bernardo, Thomas E Gorochowski
Tunable genetic devices through simultaneous control of transcription and translation. Nature communications 11 (1) (2020)
Göksel Mısırlı, Jacob Beal, Thomas E Gorochowski, Guy-Bart V Stan, Anil Wipat, Chris John Myers
SBOL Visual 2 Ontology. ACS synthetic biology 9 (4) (2020)
Grace A Meaker, Emma J Hair, Thomas E Gorochowski
Advances in engineering CRISPR-Cas9 as a molecular Swiss Army knife. Synthetic biology (Oxford, England) 5 (1) (2020)
Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan A Bartley, Jacob Beal, Matthew Crowther, Thomas E Gorochowski, Raik Grünberg, Göksel Mısırlı, James Scott-Brown, Ernst Oberortner, Anil Wipat, Chris John Myers
Synthetic biology open language (SBOL) version 3.0.0. Journal of integrative bioinformatics 17 (2-3) (2020)
Thomas E Gorochowski, Tom Ellis
Designing efficient translation. Nature biotechnology 36 (10) (2019)
Lewis Grozinger, Martyn Amos, Thomas E Gorochowski, Pablo Carbonell, Diego A Oyarzún, Ruud Stoof, Harold Fellermann, Paolo Zuliani, Huseyin Tas, Angel Goñi-Moreno
Pathways to cellular supremacy in biocomputing. Nature communications 10 (1) (2019)
Thomas E Gorochowski, Irina Chelysheva, Mette Eriksen, Priyanka Nair, Steen Pedersen, Zoya Ignatova
Absolute quantification of translational regulation and burden using combined sequencing approaches. Molecular systems biology 15 (5) (2019)
Thomas E Gorochowski, Claire S Grierson, Mario di Bernardo
Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks. Science advances 4 (3) (2018)
Thomas E Gorochowski, Amin Espah Borujeni, Yongjin Park, Alec Ak Nielsen, Jing Zhang, Bryan S Der, D Benjamin Gordon, Christopher A Voigt
Genetic circuit characterization and debugging using RNA-seq. Molecular systems biology 13 (11) (2017)
Thomas O Richardson, Thomas E Gorochowski
Beyond contact-based transmission networks: the role of spatial coincidence. Journal of the Royal Society, Interface 12 (111) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Thomas E Gorochowski